FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_PELUB (Chaperone protein dnaK OS=Pelagibacter ubique GN=dnaK PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.588e-54
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            IIGIDLGTTNSCV++MEG  PKV+EN+EG+RTTPSVVAF + GE LVG PAKRQAVTNP NT+F  KRLIGR F+DP  +K++    +KIV +  GDAW+EA G++YSPSQI AF+L KMKETAE YLG+ V+KAVITVPAYF
Sbjct:    4 IIGIDLGTTNSCVSIMEGSQPKVLENAEGARTTPSVVAFTEDGEKLVGQPAKRQAVTNPENTIFAVKRLIGRSFEDPTVKKDIAAAPFKIVNSEKGDAWIEAKGEKYSPSQISAFILQKMKETAEKYLGQEVTKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.415e-54
Identity = 99/143 (69.23%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP  T F  KRL+GR++DDP  +K+ ++V YKIV+A NGDAWVEA+ + YSPSQ+ AF+L KMKETAE++LG  V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKAPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADAKTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.415e-54
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP  T+F  KRLIGR++DDP  +K+  +V YKI +A NGDAWVE +G+ YSPSQI AF L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEVDGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7E_YEAST (Heat shock protein SSC3, mitochondrial OS=Saccharomyces cerevisiae GN=ECM10 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.530e-54
Identity = 106/170 (62.35%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  160 PSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            PSW           LTR F S    + +IGIDLGTTNS VA+MEGK P++IEN+EGSRTTPSVVAF + GE LVG PAKRQ+V N  NTLF TKRLIGR+F+D + Q+++  V +KIV+  NGDAWVEA  + YSP+QIG F+L KMKETAE+YL KSV  AV+TVPAYF
Sbjct:    3 PSWKAFKAHNILRILTR-FQSTKIPDAVIGIDLGTTNSAVAIMEGKVPRIIENAEGSRTTPSVVAFTKDGERLVGEPAKRQSVINSENTLFATKRLIGRRFEDAEVQRDINQVPFKIVKHSNGDAWVEARNRTYSPAQIGGFILNKMKETAEAYLAKSVKNAVVTVPAYF 171          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_GRABC (Chaperone protein dnaK OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.530e-54
Identity = 99/143 (69.23%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEGK+ +V+EN+EG+RTTPS++AF   GE LVG  AKRQAVTNP+NTL+  KRLIGR++DDP   K+  +V Y IVR  NGDAWVEA G++Y+PSQI AFVL+KMKETAE+YLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAIMEGKDVRVLENAEGARTTPSMIAFTDSGERLVGQAAKRQAVTNPSNTLYAVKRLIGRRYDDPTVAKDKDLVPYAIVRGDNGDAWVEARGEKYAPSQISAFVLSKMKETAEAYLGEPVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 100/143 (69.93%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK+ KVIEN+EG+RTTPS+VAF+  GE LVG PAKRQAVTNPTNTLF  KRLIGR+++DP  +K+  +V ++IV+  NGDAWV+A  + YSPSQI A +L KMKETAESYLG+ V KAVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKDTKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAWVKAQDKNYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_BRUSU (Chaperone protein dnaK OS=Brucella suis GN=dnaK PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GKN KVIEN+EG+RTTPS++AF    E L G PAKRQAVTNP  TLF  KRLIGR++DDP   K+  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_BRUO2 (Chaperone protein dnaK OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dnaK PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GKN KVIEN+EG+RTTPS++AF    E L G PAKRQAVTNP  TLF  KRLIGR++DDP   K+  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_BRUAB (Chaperone protein dnaK OS=Brucella abortus GN=dnaK PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GKN KVIEN+EG+RTTPS++AF    E L G PAKRQAVTNP  TLF  KRLIGR++DDP   K+  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 99/143 (69.23%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCV++M+GK+ KVIENSEG+RTTPS+VAF+  GE LVG PAKRQAVTNPTNTLF  KRLIGR+++DP  +K+  +V + I++  NGDAWVEA G+ YSP+QI A +L KMKETAE+YLG+ V KAVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVSVMDGKDAKVIENSEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKGYSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYF 146          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PELUB2.588e-5469.93Chaperone protein dnaK OS=Pelagibacter ubique GN=d... [more]
DNAK_RHOPB4.415e-5469.23Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_NITHX4.415e-5469.93Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
HSP7E_YEAST7.530e-5462.35Heat shock protein SSC3, mitochondrial OS=Saccharo... [more]
DNAK_GRABC7.530e-5469.23Chaperone protein dnaK OS=Granulibacter bethesdens... [more]
DNAK_AGRT59.835e-5469.93Chaperone protein dnaK OS=Agrobacterium tumefacien... [more]
DNAK_BRUSU1.284e-5369.23Chaperone protein dnaK OS=Brucella suis GN=dnaK PE... [more]
DNAK_BRUO21.284e-5369.23Chaperone protein dnaK OS=Brucella ovis (strain AT... [more]
DNAK_BRUAB1.284e-5369.23Chaperone protein dnaK OS=Brucella abortus GN=dnaK... [more]
DNAK_AGRVS1.284e-5369.23Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]

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Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
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