FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            IIGIDLGTTNSCVA+M+GK PKVIEN+EG+RTTPSVVAF + GE L+G PAKRQAVTNPTNTLF  KRLIGR   DP  +K+  MV Y+IV+ P GDAWV+A+G+ YSP ++ AF+L KMKE AE++LG+ V+KAVITVPAYF
Sbjct:    4 IIGIDLGTTNSCVAIMDGKTPKVIENAEGARTTPSVVAFLEDGERLIGQPAKRQAVTNPTNTLFAIKRLIGRTASDPVVEKDKGMVPYEIVKGPTGDAWVKAHGKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK+ KVIEN+EG RTTPS+VA    GE LVG PAKRQAVTNP  T F  KRLIGR++DDP  +K+  +V YKIV+A NGDAWVEA+G+ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWVEADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK+ KVIEN+EG RTTPS+VA    GE LVG PAKRQAVTNP  T F  KRLIGR++DDP  +K+  +V YKIV+A NGDAWVEA+G+ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWVEADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK+ KVIEN+EG RTTPS+VA    GE LVG PAKRQAVTNP  T F  KRLIGR++DDP  +K+  +V YKIV+A NGDAWVEA+G+ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWVEADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSM (Chaperone protein dnaK OS=Magnetococcus sp. (strain MC-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            ++GIDLGTTNSCV++MEG  PKVIENSEG RTTPS+VAF  +GE LVG  AKRQAVTNPTNTL+  KRLIGR+F DP T K+  +V YKIV+A NGDAWVEA+G++ SPS+  A +L KMK+TAE YLG+SVS+AVITVPAYF
Sbjct:    4 VVGIDLGTTNSCVSIMEGGEPKVIENSEGVRTTPSMVAFTNQGERLVGQAAKRQAVTNPTNTLYAIKRLIGRRFSDPLTAKDQGLVPYKIVKADNGDAWVEADGKKMSPSECSAMILQKMKQTAEDYLGESVSEAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_BRUME (Chaperone protein dnaK OS=Brucella melitensis GN=dnaK PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 98/143 (68.53%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGID+GTTNSCVA+M+GKN KVIEN+EG+RTTPS++AF    E L G PAKRQAVTNP  TLF  KRLIGR++DDP   K+  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYF
Sbjct:    4 VIGIDMGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_OLICO (Chaperone protein dnaK OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.881e-53
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK+P+VIEN+EG RTTPS+VA     E LVG PAKRQAVTNP  T+F  KRLIGR++DDP   K+  +V YKIV+A NGDAWVEA+G+ YSPSQI AF+L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKSPRVIENAEGMRTTPSIVALTDDDERLVGQPAKRQAVTNPEKTIFAVKRLIGRRYDDPTVAKDKDLVPYKIVKASNGDAWVEADGKIYSPSQISAFILQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7M_SCHPO (Heat shock 70 kDa protein, mitochondrial OS=Schizosaccharomyces pombe GN=ssp1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 1
Query:  202 LTRPFSSKPAGND-----IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +T  ++S  +GN+     +IGIDLGTT SC+A+MEG+ PKVI N+EG+RTTPSVVAF + GE LVG  AKRQAV NP NT F TKRLIGR+F +P+ Q++++ V YKIV   NGDAW+EA G+ YSPSQIG F+L+KM+ETA +YLGK V  AV+TVPAYF
Sbjct:   34 MTARWNSNASGNEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYF 194          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RICAH (Chaperone protein dnaK OS=Rickettsia akari (strain Hartford) GN=dnaK PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEGK PKVIEN+EG RTTPS++AF   GE LVG  AKRQAVTNP+NT++  KRLIGR F DP  +K+  +V Y IV+A NGDAWVEA+  +YSPSQI AF+L KMKETAE+YLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAF-ANGEKLVGQSAKRQAVTNPSNTIYAVKRLIGRNFTDPMVKKDQDIVPYNIVKADNGDAWVEADSNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYF 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RICBR (Chaperone protein dnaK OS=Rickettsia bellii (strain RML369-C) GN=dnaK PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.087e-52
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEGK PKVIENSEG RTTPS++AF   GE LVG  AKRQAVTNP NT++  KRLIGR F DP  +K+ ++V Y IV+A NGDAWVE  G+++SPSQI AF+L KMKETAE+YLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGKEPKVIENSEGERTTPSIIAF-ANGEKLVGQSAKRQAVTNPRNTVYAVKRLIGRNFTDPMVKKDQEIVPYNIVKADNGDAWVEVEGKKHSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYF 145          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_CAUCR1.678e-5369.93Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_RHOS72.191e-5369.23Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT2.191e-5369.23Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA2.191e-5369.23Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_MAGSM2.191e-5370.63Chaperone protein dnaK OS=Magnetococcus sp. (strai... [more]
DNAK_BRUME2.191e-5368.53Chaperone protein dnaK OS=Brucella melitensis GN=d... [more]
DNAK_OLICO4.881e-5369.23Chaperone protein dnaK OS=Oligotropha carboxidovor... [more]
HSP7M_SCHPO8.325e-5362.11Heat shock 70 kDa protein, mitochondrial OS=Schizo... [more]
DNAK_RICAH8.325e-5369.93Chaperone protein dnaK OS=Rickettsia akari (strain... [more]
DNAK_RICBR1.087e-5269.93Chaperone protein dnaK OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
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