FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   11 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            NA VV+ID YE+VP ++E++LQKAVANQPVSV ++  G  FQLY SGIFTG C  S +H +T VGYGTEN  D+WIVKNSWG +WGE GYIR ERN+     GKCGI   ASY
Sbjct:  103 NAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASY 214          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            ++N K V ID YE++P NDE AL KAVA+QPV+  I+     FQLYESG+F G CGT+L+HGV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  237 KENNKNVMIDGYENLPANDESALMKAVAHQPVTAVIDSSSREFQLYESGVFDGSCGTNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +++ K V ID YE++P NDE AL KAVA+QPV+  ++     FQLYESG+F G CGT+L+HGV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  244 KEDNKNVMIDGYENLPANDEAALMKAVAHQPVTAVVDSSSREFQLYESGVFDGTCGTNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    8 KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +N K VTID YE+VP N+E ALQ AV  QPVSVA++  G AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SY
Sbjct:  229 QNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKHYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSY 340          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    8 KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +N K VTID YE+VP N+E ALQ AV  QPVSVA++  G AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SY
Sbjct:  229 QNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSY 340          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            ++NA VV+ID Y +VP NDEK+LQKAVANQPVSV ++  G  FQLY +GIFTG C  S +H  T  G  TEN  DYW VKNSWG +WGE GYIR+ERN+A + +GKCGIA+  SY
Sbjct:  101 KENAHVVSIDSYRNVPSNDEKSLQKAVANQPVSVTMDAAGRDFQLYRNGIFTGSCNISANHYRTVGGRETENDKDYWTVKNSWGKNWGESGYIRVERNIAES-SGKCGIAISPSY 214          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   11 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            N   V+ID +E+VP+NDE AL KAVANQPVSVAI+ GG  FQ Y  G+FTG C T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM ASY
Sbjct:  230 NDLAVSIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNIS-KKEGLCGIAMMASY 342          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 71/111 (63.96%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   20 VVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            VV ID ++DVP N E+ L +AVANQPVSVA+E  G AF  Y  G+FTG CGT LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASY
Sbjct:  242 VVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASY 351          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 71/111 (63.96%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   20 VVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            VV ID ++DVP N E+ L +AVANQPVSVA+E  G AF  Y  G+FTG CGT LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASY
Sbjct:  242 VVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGDCGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASY 351          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   11 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            N   V+ID +E+VP NDE AL KAVANQPVSVAI+ GG  FQ Y  G+FTG C T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM  SY
Sbjct:  230 NDLAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNIS-KKEGLCGIAMLPSY 342          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CPGP2_ZINOF1.516e-3663.72Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CPR3_ARATH2.586e-3661.74Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CPR4_ARATH5.760e-3660.87Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
ACTN_ACTDE7.523e-3664.04Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH7.523e-3664.04Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPGP1_ZINOF2.189e-3561.74Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CYSEP_VIGMU3.734e-3563.16Vignain OS=Vigna mungo PE=1 SV=1[more]
CYSP2_HORVU8.318e-3563.96Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU1.419e-3463.96Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSEP_PHAVU4.128e-3462.28Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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