FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 69/115 (60.00%), Postives = 85/115 (73.91%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +++ + VTI  YEDVP ND+++L KA+A+QPVSVAIE  G  FQ Y+ G+F G+CGT LDHGV AVGYG+  G+DY IVKNSWG  WGE G+IRM+RN  G   G CGI   ASY
Sbjct:  237 KEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGKCGTDLDHGVAAVGYGSSKGSDYVIVKNSWGPRWGEKGFIRMKRN-TGKPEGLCGINKMASY 350          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +  ++ VTI+ ++DVP NDEK+L KA+A+QP+SVAI+  G  FQ Y  G+F GRCG  LDHGV AVGYG+  G+DY IVKNSWG  WGE GYIR++RN  G   G CGI   AS+
Sbjct:  238 KDESETVTINGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQFYSGGVFDGRCGVDLDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEKGYIRLKRN-TGKPEGLCGINKMASF 351          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   17 KVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +VV+I+ ++ V  N+E ALQ AVA+QPVSV +E  G  FQ Y SGIFTG CGT+ +HGV  VGYGT++G +YWIV+NSWG +WG  GYI MERNVA +  G CGIA   SY
Sbjct:  102 RVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSY 211          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   23 VTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            V I  Y+ VP N E +   A+ANQP+SV +E GG  FQLY+SG+F G CGT LDH VTAVGYGT +G +Y I+KNSWG +WGE GY+R++R  +G   G CG+   + Y
Sbjct:  239 VKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQ-SGNSQGTCGVYKSSYY 346          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.218e-26
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAM 337
            I  Y  V  NDE+++  AV+NQP++  I+     FQ Y  G+F+G CGTSL+H +T +GYG ++ G  YWIV+NSWGSSWGEGGY+RM R V+ + +G CGIAM
Sbjct:  228 ITGYSYVRRNDERSMMYAVSNQPIAALIDASEN-FQYYNGGVFSGPCGTSLNHAITIIGYGQDSSGTKYWIVRNSWGSSWGEGGYVRMARGVSSS-SGVCGIAM 329          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 63/107 (58.88%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   14 AKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIA 334
            +KVV+ID Y  VP  +E AL++AVA QP +VAI+     FQ Y SGIF+G CGT L+HGVT VGY     A+YWIV+NSWG  WGE GYIRM R V G   G CGIA
Sbjct:  100 SKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRMLR-VGG--CGLCGIA 199          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 2
Query:    8 KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL-DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            K  +VVTI+ +E VP+NDE +L+KAVA QP+SV I    M+   Y+SG++ G C     DH V  VGYGT +   DYW+++NSWG  WGEGGY+R++RN     TGKC +A+   Y
Sbjct:  232 KTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMISAANMSD--YKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVY 344          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 2
Query:   47 VPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            V  N+E +L  A+A+QPVSV +E  G  FQ Y+ GIF G CGT +DH VTAVGYG   G  Y ++KNSWG  WGE GYIR+ R  +G   G CG+   + Y
Sbjct:  245 VQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRI-RRASGNSPGVCGVYRSSYY 344          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAM 337
            I  Y  V  NDE  +  AV+NQP++  I+  G  FQ Y+ G+++G CG SL+H +T +GYG ++   YWIV+NSWGSSWG+GGY+R+ R+V+ +  G CGIAM
Sbjct:  107 ITGYSYVRRNDESHMMYAVSNQPIAALIDASGDNFQYYKGGVYSGPCGFSLNHAITIIGYGRDS---YWIVRNSWGSSWGQGGYVRIRRDVSHS-GGVCGIAM 205          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            I  Y  V  N+E+ +  AV+NQP++ A++  G  FQ Y+ G+FTG CGT L+H +  +GYG ++ G  +WIV+NSWG+ WGEGGYIR+ R+V+ +  G CGIAM+  Y
Sbjct:  228 ITRYTYVQRNNERNMMYAVSNQPIAAALDASGN-FQHYKRGVFTGPCGTRLNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSF-GLCGIAMDPLY 333          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
XCP1_ARATH5.392e-3460.00Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH4.564e-3357.39Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
ERVB_TABDI2.958e-3259.46Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
PAPA2_CARPA1.519e-2854.13Chymopapain OS=Carica papaya PE=1 SV=2[more]
BROM1_ANACO9.218e-2652.88Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
ERVC_TABDI1.572e-2558.88Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CPR2_ARATH7.803e-2549.14Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
PAPA4_CARPA3.873e-2451.49Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
MDO1_PSEMR3.873e-2449.51Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
ANAN_ANACO3.873e-2448.15Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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