FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 57/137 (41.61%), Postives = 73/137 (53.28%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTENGA-------------------DYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+      T+  Y+ V    E +L+ AV   PVSVAI+    +FQLY SGI+    C + +LDHGV AVGYG+ +G+                   +YWIVKNSWG+SWG  GYI M RN        CGIA  AS+
Sbjct:  209 YKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRN----RDNNCGIASSASF 341          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   PVSVAI+    +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  213 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 327          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y   AK      Y ++P+ +EKAL++AVA   PVSV+I+    +FQ Y  G++    C   +++H V  VGYGT+ G  YWI+KNSWG SWG  GY+ + RN        CGI   AS+
Sbjct:  212 YNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARN----KNNACGITNLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   PVSVAI+    +FQ Y  G++    C + +++H V AVGYG + G  +WI+KNSWG SWG  GYI M RN        CGIA  AS+
Sbjct:  212 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_MACMU (Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   PVSVAI+    +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  212 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   PVSVAI+    +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  212 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   PVSVAI+    +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  212 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   P+SVAI+    +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  213 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 327          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y    K      Y ++P  +EKAL++AVA   P+SVAI+    +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  212 YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   26 TIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            T+  Y +    DE ALQ AV N+ PVSV I+ G  +F  Y  G++    C +   +H VTAVGYGT+ NG DYWIVKNSWG+ WGE GYI+M RN        C IA  + Y
Sbjct:  213 TVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARN----RDNNCAIATYSVY 320          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CYSP5_DICDI1.289e-1941.61Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATK_PIG1.684e-1943.70Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATK_RAT2.199e-1942.02Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATK_RABIT2.199e-1943.70Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_MACMU2.199e-1943.70Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1[more]
CATK_MACFA2.199e-1943.70Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CATK_HUMAN2.199e-1943.70Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATK_CANFA2.872e-1942.86Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATK_BOVIN2.872e-1942.86Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CRUST_PANBO3.751e-1948.21Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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