FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 56/123 (45.53%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            YR    V     +  V    EKAL KAVA   P+SVA++ G  +FQ Y+SGI F   C + +LDHGV  VGYG E    N + YW+VKNSWG  WG  GY++    +A      CGIA  ASY
Sbjct:  213 YRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK----IAKDKNNHCGIATAASY 331          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y   AK      Y ++P+ +EKAL++AVA   P+SV+I+    +FQ Y  G++    C   +++H V  VGYGT+ G+ +WI+KNSWG SWG  GY  + RN        CGI   AS+
Sbjct:  212 YNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARN----KNNACGITNMASF 326          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFT-GRCGTSLDHGVTAVGYGTENG-ADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            ++++  VVT + + ++   DE AL+ AVA + PV V I G   +F+ Y+ G+++ G CG   DH V AVGYGT     DYWIVKNSWG+ WG+ GY+ M RN        C IA  AS+
Sbjct:  280 WQQSIAVVTDNGFNEIQPGDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSEGNCGRP-DHAVLAVGYGTHPSYGDYWIVKNSWGTDWGKDGYVYMARNRG----NMCHIASAASF 393          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYG---TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+          + D+P   EKAL KAVA   P+SVAI+ G  +FQ Y+SGI F   C +  LDHGV  VGYG   T++   +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  214 YKPECSAANDTGFVDLPQR-EKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASY 330          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTEN----GADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y     V     + D+P   EKAL KAVA   P+SVAI+ G  +F  Y+ GI F   C +  +DHGV  VGYG E+     + YW+VKNSWG  WG GGYI+M ++        CGIA  ASY
Sbjct:  213 YNPEYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNSKYWLVKNSWGEEWGMGGYIKMAKD----RRNHCGIASAASY 330          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+          + D+P   EKAL KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E    N   +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  214 YKPECSAANDTGFVDIPQR-EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASY 331          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+          + D+P   EKAL KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E    N + +WIVKNSWG  WG  GY++M ++        CGI+  ASY
Sbjct:  214 YKPECSAANDTGFVDIPQR-EKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGISTAASY 331          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+          + D+P   EKAL KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E    N   +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  214 YKPECSAANDTGFVDIPQR-EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASY 331          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y+     V + D  ++ L  E  L+ AV   +PVSVA +     F++Y+SG++T   CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  244 YKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVIN-GFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   38 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGAD-YWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            + D+P   EKAL KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E   + +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  112 FVDIPQR-EKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKD----QNNHCGIATAASY 214          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CATL2_HUMAN6.398e-1945.53Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATK_MOUSE1.091e-1840.34Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATL_BRUPA1.425e-1843.70Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATL1_CANFA1.862e-1845.08Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATL1_CERAE2.431e-1844.72Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL2_BOVIN3.176e-1844.72Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_PIG3.176e-1843.90Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATL1_BOVIN3.176e-1844.72Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
ORYC_ORYSJ7.074e-1842.98Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL1_SHEEP1.207e-1749.07Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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