FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   20 VVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            V  + +  ++ LNDE A+ +AVA   PVS A E     F +Y+SG+++     +    ++H V AVGYG +NG  YWIVKNSWGS+WG  GY  +ER         CG+A  ASY
Sbjct:  220 VAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTE-DFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERG-----KNMCGLAACASY 328          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   44 DVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFT-GRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            ++ L  E  L+ AV   +PVS+A E    +F+LY+SG++T   CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  254 NITLGAEDELKHAVGLVRPVSIAFEVIH-SFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   44 DVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            ++ L  E  L+ AVA  +PVSVA E     F+ Y+SG++    CG +   ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASY
Sbjct:  252 NITLGAEYELKYAVALVRPVSVAFEVV-KGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASY 352          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRM--ERNVAGTLT 316
            I  Y  VP N+E  L+ A++   V V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WG+ GYI M  E N  G  T
Sbjct:  203 ITGYTKVPRNNEAELKAALSQGLVDVSIDASSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVAT 304          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    8 KNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIF--TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            K+  VV +  Y+ V  + E +L++AV    P+S  + G  M  + Y  GIF  +   G +L HGV  VGYG ENG  YWI+KN+WG+ WGE GYIR+ R+        CG+   ASY
Sbjct:  211 KSRSVVELTGYKKVTAS-ETSLKEAVGTIGPISAVVFGKPM--KSYGGGIFDDSSCLGDNLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASY 320          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRM--ERNVAGTLT 316
            I  Y  V  N+E  L+ A++   V V+I+   + FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WGE GYI M  E N  G  T
Sbjct:  203 IKSYNRVARNNEVELKAAISQGLVDVSIDASSVQFQLYKSGAYTDTQCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMVIEGNTCGVAT 304          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRM--ERNVAGTLT 316
            I  Y  VP N+E  L+ A++   + V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+SWG+ GYI M  E N  G  T
Sbjct:  198 ITGYTKVPRNNEAELKAALSQGLLDVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVAT 299          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRM--ERNVAGTLT 316
            I  Y  VP N+E  L+ A++   V V+I+     FQLY+SG ++  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WG+ GYI M  E N  G  T
Sbjct:  196 ITGYNKVPRNNEAELKAALSQGLVDVSIDASSAKFQLYKSGAYSDTKCKNNFFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVAT 297          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y        + D+  +P   E+AL KAVA   P+SVA++    +FQ Y+SGI+   +C    L+H V  VGYG E    +G  YW+VKNSWG  WG  GYI+    +A      CGIA  A+Y
Sbjct:  213 YHAENSAANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIK----IAKDWNNHCGIATLATY 330          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   14 AKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD--YWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGI 331
            AK V++  Y       ++ + +++ + P SV +       + Y+SG+FTG CG SL+H V  VG G +      YW+V+NSWG+ WGE GY+R+ER   G  T KCG+
Sbjct:  328 AKKVSVPSYH--VFKGKEVMTRSLTSSPCSVYLSVSPELAK-YKSGVFTGECGKSLNHAVVLVGEGYDEVTKKRYWVVQNSWGTDWGENGYMRLERTNMG--TDKCGV 430          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CATH_RAT3.882e-1642.61Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
ALEU_ARATH6.621e-1643.93Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP3_SOLLC8.648e-1644.86Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CPP2_ENTHI8.648e-1644.12Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATLL_PHACE8.648e-1641.88Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CPP1_ENTHI1.475e-1544.12Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
ACP2_ENTHI1.475e-1544.12Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CPP3_ENTHI1.927e-1543.14Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
TEST2_MOUSE2.516e-1540.65Testin-2 OS=Mus musculus PE=2 SV=1[more]
CYSP_THEPA7.321e-1538.89Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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