FC875449

Overview
NameFC875449
Unique NameFC875449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:797..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            + D  ++ + DE+A+ +AVA   PVS A E     F +Y +GI++     +    ++H V AVGYG +NG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  225 VKDVANITIYDEEAMVEAVALYNPVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 2
Query:   23 VTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTGR-CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            V + D  ++ L  E  L+ AV   +PVSVA E     F+ Y+ G+FT   CG +   ++H V AVGYG E+   YW++KNSWG  WG+ GY +ME          CG+A  +SY
Sbjct:  247 VQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVH-EFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMG-----KNMCGVATCSSY 354          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   23 VTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGI 331
            V ID    +  ND       ++   V +A+       +LY  GIFTG+CG  L+H V  VG G   E G  YWI+KNSWG  WGE G++R++R   G    KCGI
Sbjct:  330 VFIDSISILKGNDVVNKSLVISPTVVGIAVT---KELKLYSGGIFTGKCGGELNHAVLLVGEGVDHETGMRYWIIKNSWGEDWGENGFLRLQRTKKG--LDKCGI 429          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYG-----TENGADYWIVKNSWGSSWGEGGYIRMERN 298
            YR    V  + DY D+P  + + +    A  P+S AI+     F+ Y+ GI+     +S  +DHGV  VGYG     TEN   YWI+KNSWG+ WG  GYI+M ++
Sbjct:   34 YRPENSVANVTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADGTETEN-KKYWIIKNSWGTDWGMDGYIKMAKD 138          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 2
Query:    5 RKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG--RCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            +K   V T+     V    E  LQ  +A N PV+V ++    +FQLY+ G      +C + + +H VTAVGYG+ +   YWI++NSWG+SWG+ GY  + R+        CGI  +++Y
Sbjct:  187 KKVKNVATVTGSRRVTDGSETGLQTIIAENGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARD----SNNMCGIGRDSNY 301          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 53/155 (34.19%), Postives = 69/155 (44.52%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI-FTGRCG-TSLDHGVTAVGYGTENGAD-------------------------------------YWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            + K+    TI  Y ++    E +L+    + PVSVAI+    +FQLY SGI +  +C  T LDHGV  VGYG +   D                                     YWIVKNSWG+SWG  GYI M ++        CGIA  +SY
Sbjct:  223 FNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKD----RKNNCGIASVSSY 373          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            Y        + D+  +P   E+AL KAVA   P+SVA++    +FQ Y SGI+   +C    L+H V  VGYG E    +G  +W+VKNSWG  WG  GY+++ ++     +  CGIA  ++Y
Sbjct:  213 YHAENSAANVRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKD----WSNHCGIATYSTY 330          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   29 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMER 295
            I D+ D+P +++        N P+++A++    +F  Y  GI T      LDHGV  VGY   +   YWI+KNSW + WGE GYIR+E+
Sbjct:  237 ITDHVDLPQDEDAIAAYLAENGPLAIAVDAE--SFMDYNGGILTSCTSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEK 323          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   56 NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNV 301
            N+E   ++ +   P+++AI+   ++   Y  GI        L+H V  VGYGTE G  YW +KNSWGS WGE GY R++RN+
Sbjct:  242 NEENLKKELITMGPIAMAIDAASIS--TYSKGIIHFCENLGLNHAVLLVGYGTEGGVSYWTLKNSWGSDWGEDGYFRVKRNI 321          
BLAST of FC875449 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = 2
Query:    2 YRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 349
            YR       I DY ++P N E  L  AVA+  PVS AI+    +F+ Y  GI+    C +  ++H V  VGYG+E    +G +YW++KNSWG  WG  GY++    +A      CGIA  ASY
Sbjct:  213 YRSENASANITDYVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQ----IAKDHNNHCGIASLASY 330          
The following BLAST results are available for this feature:
BLAST of FC875449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CATH_HUMAN7.321e-1541.07Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
ALEUL_ARATH9.561e-1540.35Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP_THEAN1.249e-1440.95Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CATL1_FELCA1.249e-1439.62Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
ACP1_ENTHI1.249e-1436.13Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CYSP2_DICDI2.782e-1434.19Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
TEST2_RAT3.633e-1437.40Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CYSP_TRYBB4.745e-1439.33Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATV_NPVAH1.381e-1341.46Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATJ_MOUSE1.381e-1339.84Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404A10EF CTVClemen1 Citrus clementina cDNA clone C31404A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875449 ID=FC875449; Name=FC875449; organism=Citrus clementina; type=EST; length=699bp
ATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTC
CCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTG
AGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGG
TATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTG
TTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCA
TGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGT
GGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATC
CCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCCTCCATCT
CCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAG
CAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGG
GATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGC
TGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGAT
GAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTA
AACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATT
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