FC875450

Overview
NameFC875450
Unique NameFC875450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_SHEEP (Casein kinase I isoform alpha OS=Ovis aries GN=CSNK1A1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_RABIT (Casein kinase I isoform alpha OS=Oryctolagus cuniculus GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_MOUSE (Casein kinase I isoform alpha OS=Mus musculus GN=Csnk1a1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_HUMAN (Casein kinase I isoform alpha OS=Homo sapiens GN=CSNK1A1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_CHICK (Casein kinase I isoform alpha OS=Gallus gallus GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_BOVIN (Casein kinase I isoform alpha OS=Bos taurus GN=CSNK1A1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G E DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_RAT (Casein kinase I isoform alpha OS=Rattus norvegicus GN=Csnk1a1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.194e-41
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG+IYL  NI   EEVA+KLE+ K +HPQLLYESKLY+ILQGG GIP++RW+G   DYNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQGKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: HRR25_YEAST (Casein kinase I homolog HRR25 OS=Saccharomyces cerevisiae GN=HRR25 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.704e-40
Identity = 76/112 (67.86%), Postives = 95/112 (84.82%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            M+ RVG KFR+GRKIGSGSFG+IY GTN+ + EEVAIKLE+++++HPQL YES++YR L GG GIP +RWFG EG+YN +V+DLLGPSLEDLFN+C R+ S KTV+MLA  M
Sbjct:    1 MDLRVGRKFRIGRKIGSGSFGDIYHGTNLISGEEVAIKLESIRSRHPQLDYESRVYRYLSGGVGIPFIRWFGREGEYNAMVIDLLGPSLEDLFNYCHRRFSFKTVIMLALQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1A_CAEEL (Casein kinase I isoform alpha OS=Caenorhabditis elegans GN=kin-19 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.531e-40
Identity = 76/108 (70.37%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            V  K++L RKIGSGSFG+IY+  N+   EEVAIKLE+ + +HPQLLYESK+YRILQGG GIP++RW+G E +YNVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   12 VATKYKLIRKIGSGSFGDIYVSINVTNGEEVAIKLESNRARHPQLLYESKVYRILQGGVGIPHIRWYGTEREYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 119          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1AL_HUMAN (Casein kinase I isoform alpha-like OS=Homo sapiens GN=CSNK1A1L PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.904e-39
Identity = 76/108 (70.37%), Postives = 90/108 (83.33%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG K++L RKIGSGSFG++YLG      E+VA+KLE+ K KHPQLLYESKLY ILQGG GIP++ W+G E D NVLVMDLLGPSLEDLFNFCSR+ ++KTVLMLA+ M
Sbjct:   13 VGGKYKLVRKIGSGSFGDVYLGITTTNGEDVAVKLESQKVKHPQLLYESKLYTILQGGVGIPHMHWYGQEKDNNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQM 120          
The following BLAST results are available for this feature:
BLAST of FC875450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1A_SHEEP4.927e-4274.07Casein kinase I isoform alpha OS=Ovis aries GN=CSN... [more]
KC1A_RABIT4.927e-4274.07Casein kinase I isoform alpha OS=Oryctolagus cunic... [more]
KC1A_MOUSE4.927e-4274.07Casein kinase I isoform alpha OS=Mus musculus GN=C... [more]
KC1A_HUMAN4.927e-4274.07Casein kinase I isoform alpha OS=Homo sapiens GN=C... [more]
KC1A_CHICK4.927e-4274.07Casein kinase I isoform alpha OS=Gallus gallus GN=... [more]
KC1A_BOVIN4.927e-4274.07Casein kinase I isoform alpha OS=Bos taurus GN=CSN... [more]
KC1A_RAT3.194e-4173.15Casein kinase I isoform alpha OS=Rattus norvegicus... [more]
HRR25_YEAST2.704e-4067.86Casein kinase I homolog HRR25 OS=Saccharomyces cer... [more]
KC1A_CAEEL3.531e-4070.37Casein kinase I isoform alpha OS=Caenorhabditis el... [more]
KC1AL_HUMAN3.904e-3970.37Casein kinase I isoform alpha-like OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC31404B01EF CTVClemen1 Citrus clementina cDNA clone C31404B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875450 ID=FC875450; Name=FC875450; organism=Citrus clementina; type=EST; length=667bp
AAAATTAGATATGCATATGAAGATAGCAAAACGATAGCGTTTCATTAACC
TAACTCTGAGTCCTGACCATAATTTCTTTCCTTTTTTTTCGTTTTTCCTT
TTTAAAATCTTGAAGAAAAAGAAACCCTAGATCTTCAAATTTATCTTCCT
ACTCACATTTTTTGTCGAGGAAATTTCTTTGCAATTTTTATCGGTTGTCG
GTGCGGTTGATTCGCTGCAGACTGTCGTGTTTTTTTTATAGCTTTTTTAA
CTTTCATCTTTCGATAATTTCAGTTTTTAGTTAGGGTTCTGCAATAGGGC
TAGGGTTTCAATCGCAATTGTATCGATGGAGCCACGTGTCGGGAACAAAT
TTCGGTTGGGTCGGAAGATCGGAAGCGGGTCGTTTGGAGAGATCTATCTT
GGCACTAATATTCAGACAAATGAAGAGGTCGCCATTAAGCTTGAAAATGT
CAAGACAAAGCATCCGCAGTTGTTATATGAATCCAAATTATACAGAATAC
TACAGGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGAGTGGAAGGA
GACTATAATGTTCTGGTGATGGATTTACTTGGACCTAGTCTTGAAGATCT
ATTTAACTTCTGCAGCAGGAAACTTTCTTTGAAGACAGTTCTTATGCTTG
CAGAATCAATGGATCAT
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