FC875450

Overview
NameFC875450
Unique NameFC875450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G3_HUMAN (Casein kinase I isoform gamma-3 OS=Homo sapiens GN=CSNK1G3 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L  G GIP V +FG  G YN +V++LLGPSLEDLF+ C R  SLKTVLM+A
Sbjct:   39 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIA 143          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G3_BOVIN (Casein kinase I isoform gamma-3 (Fragment) OS=Bos taurus GN=CSNK1G3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L  G GIP V +FG  G YN +V++LLGPSLEDLF+ C R  SLKTVLM+A
Sbjct:   25 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIA 129          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_DANRE (Casein kinase I isoform gamma-1 OS=Danio rerio GN=csnk1g1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.021e-28
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE VK++ PQL  E + Y+ L    G+P V +FG  G YN +V++LLGPSLEDLF+ C R  SLKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELKLGKNLYTNEYVAIKLEPVKSRAPQLHLEYRFYKTLGSADGLPQVFYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIA 144          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: CKI1_SCHPO (Casein kinase I homolog 1 OS=Schizosaccharomyces pombe GN=cki1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +++GR+IG GSFG I+ GTN+  N++VAIK E  ++  PQL  E + Y++L G TGIPNV +FG EG +N+LV+DLLGPSLEDL + C RK S+KTV M A+ M
Sbjct:    8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNILVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 115          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G2_HUMAN (Casein kinase I isoform gamma-2 OS=Homo sapiens GN=CSNK1G2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L    G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   42 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSATEGVPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 146          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: CKI2_SCHPO (Casein kinase I homolog 2 OS=Schizosaccharomyces pombe GN=cki2 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +R+GRKIG GSFG I+ G N+  N+ +AIK E  K++ PQL  E + Y++L G  GIPNV +FG EG +N+LV+DLLGPSLEDLF +C R+ S+KTV M A+ M
Sbjct:    8 VGVHYRVGRKIGEGSFGVIFDGMNLLNNQLIAIKFEPKKSEAPQLRDEYRTYKLLVGNAGIPNVYYFGQEGLHNILVIDLLGPSLEDLFEWCGRRFSVKTVAMTAKQM 115          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G2_RAT (Casein kinase I isoform gamma-2 OS=Rattus norvegicus GN=Csnk1g2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.477e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L    G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   42 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTEGVPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 146          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G2_MOUSE (Casein kinase I isoform gamma-2 OS=Mus musculus GN=Csnk1g2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.477e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L    G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   42 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTEGVPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 146          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_RAT (Casein kinase I isoform gamma-1 OS=Rattus norvegicus GN=Csnk1g1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L   G G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 145          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_MOUSE (Casein kinase I isoform gamma-1 OS=Mus musculus GN=Csnk1g1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L   G G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 145          
The following BLAST results are available for this feature:
BLAST of FC875450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1G3_HUMAN3.100e-2859.05Casein kinase I isoform gamma-3 OS=Homo sapiens GN... [more]
KC1G3_BOVIN3.100e-2859.05Casein kinase I isoform gamma-3 (Fragment) OS=Bos ... [more]
KC1G1_DANRE9.021e-2858.10Casein kinase I isoform gamma-1 OS=Danio rerio GN=... [more]
CKI1_SCHPO2.010e-2755.56Casein kinase I homolog 1 OS=Schizosaccharomyces p... [more]
KC1G2_HUMAN2.625e-2756.19Casein kinase I isoform gamma-2 OS=Homo sapiens GN... [more]
CKI2_SCHPO2.625e-2755.56Casein kinase I homolog 2 OS=Schizosaccharomyces p... [more]
KC1G2_RAT4.477e-2756.19Casein kinase I isoform gamma-2 OS=Rattus norvegic... [more]
KC1G2_MOUSE4.477e-2756.19Casein kinase I isoform gamma-2 OS=Mus musculus GN... [more]
KC1G1_RAT9.974e-2756.60Casein kinase I isoform gamma-1 OS=Rattus norvegic... [more]
KC1G1_MOUSE9.974e-2756.60Casein kinase I isoform gamma-1 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31404B01EF CTVClemen1 Citrus clementina cDNA clone C31404B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875450 ID=FC875450; Name=FC875450; organism=Citrus clementina; type=EST; length=667bp
AAAATTAGATATGCATATGAAGATAGCAAAACGATAGCGTTTCATTAACC
TAACTCTGAGTCCTGACCATAATTTCTTTCCTTTTTTTTCGTTTTTCCTT
TTTAAAATCTTGAAGAAAAAGAAACCCTAGATCTTCAAATTTATCTTCCT
ACTCACATTTTTTGTCGAGGAAATTTCTTTGCAATTTTTATCGGTTGTCG
GTGCGGTTGATTCGCTGCAGACTGTCGTGTTTTTTTTATAGCTTTTTTAA
CTTTCATCTTTCGATAATTTCAGTTTTTAGTTAGGGTTCTGCAATAGGGC
TAGGGTTTCAATCGCAATTGTATCGATGGAGCCACGTGTCGGGAACAAAT
TTCGGTTGGGTCGGAAGATCGGAAGCGGGTCGTTTGGAGAGATCTATCTT
GGCACTAATATTCAGACAAATGAAGAGGTCGCCATTAAGCTTGAAAATGT
CAAGACAAAGCATCCGCAGTTGTTATATGAATCCAAATTATACAGAATAC
TACAGGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGAGTGGAAGGA
GACTATAATGTTCTGGTGATGGATTTACTTGGACCTAGTCTTGAAGATCT
ATTTAACTTCTGCAGCAGGAAACTTTCTTTGAAGACAGTTCTTATGCTTG
CAGAATCAATGGATCAT
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