FC875450

Overview
NameFC875450
Unique NameFC875450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_MACFA (Casein kinase I isoform gamma-1 OS=Macaca fascicularis GN=CSNK1G1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L   G G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 145          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_HUMAN (Casein kinase I isoform gamma-1 OS=Homo sapiens GN=CSNK1G1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L   G G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 145          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_BOVIN (Casein kinase I isoform gamma-1 OS=Bos taurus GN=CSNK1G1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L   G G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   39 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 144          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: CKI3_SCHPO (Casein kinase I homolog 3 OS=Schizosaccharomyces pombe GN=cki3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 57/108 (52.78%), Postives = 80/108 (74.07%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +R+G+KIG GSFG ++ G N+  N+ +A+K E+ K++ PQL  E   Y++L G  GIP+V ++G EG YN+LVMDLLGPSLEDLF++C R+ S KTV M+A+ M
Sbjct:   11 VGVHYRVGKKIGEGSFGMLFQGVNLINNQPIALKFESRKSEVPQLRDEYLTYKLLMGLPGIPSVYYYGQEGMYNLLVMDLLGPSLEDLFDYCGRRFSPKTVAMIAKQM 118          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_CHICK (Casein kinase I isoform gamma-1 OS=Gallus gallus GN=CSNK1G1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRIL-QGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L     G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   39 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAAEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 144          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1G1_XENLA (Casein kinase I isoform gamma-1 OS=Xenopus laevis GN=csnk1g1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGT--GIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLA 652
            VG  FR+G+KIG G+FGE+ LG N+ TNE VAIKLE +K++ PQL  E + Y+ L G T  G+P V +FG  G YN +V++LLGPSLEDLF+ C R  +LKTVLM+A
Sbjct:   40 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQL-GNTAEGLPQVFYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIA 145          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: RAG8_KLULA (Casein kinase I homolog RAG8 OS=Kluyveromyces lactis GN=RAG8 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +++G+KIG GSFG ++ G N+  N  VAIK E  KT  PQL  E + Y+IL G  GIP   +FG EG +N+LV+DLLGPSLEDLF++C R+ S+KTV+ +A  M
Sbjct:   73 VGLHYKIGKKIGEGSFGVLFEGVNMINNVPVAIKFEPRKTDAPQLKDEYRTYKILSGSEGIPQAYYFGQEGLHNILVIDLLGPSLEDLFDWCGRRFSIKTVVHVAIQM 180          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC11_YEAST (Casein kinase I homolog 1 OS=Saccharomyces cerevisiae GN=YCK1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +++G+KIG GSFG ++ GTN+     VAIK E  KT+ PQL  E K Y+IL G   IP   +FG EG +N+LV+DLLGPSLEDLF++C RK S+KTV+ +A  M
Sbjct:   65 VGLHYKIGKKIGEGSFGVLFEGTNMINGVPVAIKFEPRKTEAPQLRDEYKTYKILNGTPNIPYAYYFGQEGLHNILVIDLLGPSLEDLFDWCGRKFSVKTVVQVAVQM 172          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC12_YEAST (Casein kinase I homolog 2 OS=Saccharomyces cerevisiae GN=YCK2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  +++G+KIG GSFG ++ GTN+     VAIK E  KT+ PQL  E + Y+IL G  GIP   +FG EG +N+LV+DLLGPSLEDLF++C R+ S+KTV+ +A  M
Sbjct:   72 VGLHYKIGKKIGEGSFGVLFEGTNMINGLPVAIKFEPRKTEAPQLKDEYRTYKILAGTPGIPQEYYFGQEGLHNILVIDLLGPSLEDLFDWCGRRFSVKTVVQVAVQM 179          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC13_YEAST (Casein kinase I homolog 3 OS=Saccharomyces cerevisiae GN=YCK3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  338 VGNKFRLGRKIGSGSFGEIYLGTNI-----------------QTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            VG  + +G KIG GSFG I+ G NI                   NE VAIK E   +  PQL  E + YRIL G  GIP+  +FG EG +N+L++DLLGPSLEDLF +C RK S+KT  M+A+ M
Sbjct:   10 VGIHYAVGPKIGEGSFGVIFEGENILHSCQAQTGSKRDSSIIMANEPVAIKFEPRHSDAPQLRDEFRAYRILNGCVGIPHAYYFGQEGMHNILIIDLLGPSLEDLFEWCGRKFSVKTTCMVAKQM 134          
The following BLAST results are available for this feature:
BLAST of FC875450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1G1_MACFA9.974e-2756.60Casein kinase I isoform gamma-1 OS=Macaca fascicul... [more]
KC1G1_HUMAN9.974e-2756.60Casein kinase I isoform gamma-1 OS=Homo sapiens GN... [more]
KC1G1_BOVIN9.974e-2756.60Casein kinase I isoform gamma-1 OS=Bos taurus GN=C... [more]
CKI3_SCHPO1.701e-2652.78Casein kinase I homolog 3 OS=Schizosaccharomyces p... [more]
KC1G1_CHICK4.950e-2655.66Casein kinase I isoform gamma-1 OS=Gallus gallus G... [more]
KC1G1_XENLA8.443e-2657.01Casein kinase I isoform gamma-1 OS=Xenopus laevis ... [more]
RAG8_KLULA4.190e-2552.78Casein kinase I homolog RAG8 OS=Kluyveromyces lact... [more]
KC11_YEAST5.473e-2553.70Casein kinase I homolog 1 OS=Saccharomyces cerevis... [more]
KC12_YEAST9.335e-2552.78Casein kinase I homolog 2 OS=Saccharomyces cerevis... [more]
KC13_YEAST2.542e-2247.20Casein kinase I homolog 3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31404B01EF CTVClemen1 Citrus clementina cDNA clone C31404B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875450 ID=FC875450; Name=FC875450; organism=Citrus clementina; type=EST; length=667bp
AAAATTAGATATGCATATGAAGATAGCAAAACGATAGCGTTTCATTAACC
TAACTCTGAGTCCTGACCATAATTTCTTTCCTTTTTTTTCGTTTTTCCTT
TTTAAAATCTTGAAGAAAAAGAAACCCTAGATCTTCAAATTTATCTTCCT
ACTCACATTTTTTGTCGAGGAAATTTCTTTGCAATTTTTATCGGTTGTCG
GTGCGGTTGATTCGCTGCAGACTGTCGTGTTTTTTTTATAGCTTTTTTAA
CTTTCATCTTTCGATAATTTCAGTTTTTAGTTAGGGTTCTGCAATAGGGC
TAGGGTTTCAATCGCAATTGTATCGATGGAGCCACGTGTCGGGAACAAAT
TTCGGTTGGGTCGGAAGATCGGAAGCGGGTCGTTTGGAGAGATCTATCTT
GGCACTAATATTCAGACAAATGAAGAGGTCGCCATTAAGCTTGAAAATGT
CAAGACAAAGCATCCGCAGTTGTTATATGAATCCAAATTATACAGAATAC
TACAGGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGAGTGGAAGGA
GACTATAATGTTCTGGTGATGGATTTACTTGGACCTAGTCTTGAAGATCT
ATTTAACTTCTGCAGCAGGAAACTTTCTTTGAAGACAGTTCTTATGCTTG
CAGAATCAATGGATCAT
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