FC875450

Overview
NameFC875450
Unique NameFC875450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4169 contig Ccv1_Contig4169:49..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC11_ENCCU (Probable casein kinase I homolog ECU03_0910 OS=Encephalitozoon cuniculi GN=ECU03_0910 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 2 
Query:  353 RLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFG---VEGDY-NVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            +L +KI SG+FG+I++G N  TN+ VA+KLE  K  + QL +E  +Y+ L GGT  P +  +G    E  Y N LVM+L+G SLE LF  CSR+ SLKTVLML E M
Sbjct:    9 KLVQKIASGAFGDIFIGQNTVTNQTVAVKLEK-KAHYGQLKHEYGVYKAL-GGTRTPRIYEYGKILYENVYVNGLVMELMGKSLEQLFVTCSRRFSLKTVLMLGERM 113
The following BLAST results are available for this feature:
BLAST of FC875450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC11_ENCCU5.485e-1750.47Probable casein kinase I homolog ECU03_0910 OS=Enc... [more]

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Properties
Property NameValue
Genbank descriptionC31404B01EF CTVClemen1 Citrus clementina cDNA clone C31404B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875450 ID=FC875450; Name=FC875450; organism=Citrus clementina; type=EST; length=667bp
AAAATTAGATATGCATATGAAGATAGCAAAACGATAGCGTTTCATTAACC
TAACTCTGAGTCCTGACCATAATTTCTTTCCTTTTTTTTCGTTTTTCCTT
TTTAAAATCTTGAAGAAAAAGAAACCCTAGATCTTCAAATTTATCTTCCT
ACTCACATTTTTTGTCGAGGAAATTTCTTTGCAATTTTTATCGGTTGTCG
GTGCGGTTGATTCGCTGCAGACTGTCGTGTTTTTTTTATAGCTTTTTTAA
CTTTCATCTTTCGATAATTTCAGTTTTTAGTTAGGGTTCTGCAATAGGGC
TAGGGTTTCAATCGCAATTGTATCGATGGAGCCACGTGTCGGGAACAAAT
TTCGGTTGGGTCGGAAGATCGGAAGCGGGTCGTTTGGAGAGATCTATCTT
GGCACTAATATTCAGACAAATGAAGAGGTCGCCATTAAGCTTGAAAATGT
CAAGACAAAGCATCCGCAGTTGTTATATGAATCCAAATTATACAGAATAC
TACAGGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGAGTGGAAGGA
GACTATAATGTTCTGGTGATGGATTTACTTGGACCTAGTCTTGAAGATCT
ATTTAACTTCTGCAGCAGGAAACTTTCTTTGAAGACAGTTCTTATGCTTG
CAGAATCAATGGATCAT
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