FC875451

Overview
NameFC875451
Unique NameFC875451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:3..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  214 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 54/147 (36.73%), Postives = 68/147 (46.26%), Query Frame = 1
Query:  256 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP  F E KV
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKV 190          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 58/180 (32.22%), Postives = 81/180 (45.00%), Query Frame = 1
Query:  157 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP  F E K+
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKL 189          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP +FAE KV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP +FAE KV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP +FAE KV
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 62          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP +FAE KV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 211          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP +FAE KV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 211          
BLAST of FC875451 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  487 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPRSFAEXKV 693
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP +FAE KV
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKV 70          
The following BLAST results are available for this feature:
BLAST of FC875451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB12_SOLLC4.256e-1530.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.558e-1537.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC2.112e-1436.73Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU8.026e-1432.22Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC1.369e-1361.29Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.369e-1361.29Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.369e-1361.29Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.369e-1361.29Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.369e-1361.29Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA3.983e-1355.71Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionC31404B02EF CTVClemen1 Citrus clementina cDNA clone C31404B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875451 ID=FC875451; Name=FC875451; organism=Citrus clementina; type=EST; length=693bp
ATATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGC
ATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCC
AGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCT
GACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAG
CATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGC
AAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGAT
ACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCT
AGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCT
TCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGG
TTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGG
CAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCC
AGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACT
TGGTTTGGCTGATGACCCCCGATCATTTGCTGAGNTGAAGGTC
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