FC875453

Overview
NameFC875453
Unique NameFC875453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.189e-52
Identity = 106/209 (50.72%), Postives = 136/209 (65.07%), Query Frame = 3
Query:  102 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            A  FGR D++    S +A LAEF+ST +FVFA  GS ++ +K+  + A       P GL+ +A+ H FALF AV+   N+SGGHVNPAVTFG  +GG++T +  I+YWIAQLLG+I+A  LL++ T G+                       TFGLVY VY+T  DPK+GSLG IAP+AIG IVGANIL  GPFSG  MNPAR+FGPA+
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPAL 216          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52
Identity = 105/209 (50.24%), Postives = 136/209 (65.07%), Query Frame = 3
Query:  102 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            A  FGR D++    S +A LAEF+ST +FVFAG GS +A +K+  D A       P GLV +A+ H  ALF AV+   N+SGGHVNPAVTF   +GG+I+++  I+YW+AQL+G+I+A  LL++ T GL     +                 TF LVY VY+TA DPK+GS+G IAP+AIG IVGANIL  GPF G  MNPAR+FGPA+
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPAL 216          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52
Identity = 101/207 (48.79%), Postives = 138/207 (66.67%), Query Frame = 3
Query:   93 STMAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +T   +FGR D++    S +A LAEF ST +FVFAG GS +A  K+  D+A     L+A+A+ H FALF AV+   ++SGGHVNPAV+FG  +GG+I+++  ++YWIAQLLGSIVA+ +L++VT  +     +                 TFGL+YTVY TA DPK+G++  IAP+AIG IVGANIL  GPF G  MNPA +FGP++
Sbjct:    2 ATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSL 208          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52
Identity = 97/200 (48.50%), Postives = 137/200 (68.50%), Query Frame = 3
Query:  114 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            GR +D+    + +A ++EF++T +FVFA  GS ++  K+  D +  P GLVA+++ H  AL VAVA+  NISGGHVNPA+TFG  LGG+++++  +FYW+AQLLG++VA+ LL++ TGG+  P                    TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+
Sbjct:   15 GRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQDMST-PGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPAL 213          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.525e-51
Identity = 97/200 (48.50%), Postives = 134/200 (67.00%), Query Frame = 3
Query:  114 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +    GLVA+A+ H  AL VAVA+  NISGGHVNPAVTFG  +GG+++++  + YW+AQLLG++ A+ LL++ TGG+  P                    TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+
Sbjct:   14 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDMST-AGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPAL 212          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.607e-49
Identity = 96/202 (47.52%), Postives = 130/202 (64.36%), Query Frame = 3
Query:  114 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAAL--DPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +      GLVA+A+ H   L VAVA+  N+SGGHVNPAVTFG  +GG+++++  + YW AQLLG++ A+ LL++ TGG   P                    TFG VY  YAT  DPK+G LGTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+
Sbjct:   16 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPAL 217          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 98/203 (48.28%), Postives = 123/203 (60.59%), Query Frame = 3
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            I  G   ++      KA + EFI+T LFVFAGVGSA+A + +  +  +   GL A+A+ H F + V ++ G +ISGGH+NPAVT GL LGG I++     YWI QLL S  A FLL  +TGG+  P H                  TF L++TVYAT  DPKKGSL    P+  GF+VGANILA G FSG  MNPARSFGPA+
Sbjct:    4 IELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTLV---GLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPAL 202          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.239e-42
Identity = 91/191 (47.64%), Postives = 117/191 (61.26%), Query Frame = 3
Query:  141 GSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            G+ +A L+EF++T +FVFA  GS     KM  D      GL+ +A+ H  AL  AVA+  N SGGHVNPAVTFG+ +G +I+      YW AQLLG+++A  LL++ +GG+                       TFGLVYTVYATA D + G  G IAP+AIG + GANILA GPF G  MNPAR+FGPA+
Sbjct:   26 GATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTGT-LGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPAL 214          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 92/202 (45.54%), Postives = 117/202 (57.92%), Query Frame = 3
Query:  132 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLG--------TIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            FS  + +AY AEF ST LFVF  VGS I+   +T D   D S L+A A+   F LF AV I A++SGGHVNPAVTF  A+GG IT+ + IFYW +Q+LGS  A  +L  ++ G AVPT                   TF +VYTV+  A DP+ G  G         +  + +G + GA +LAAG  +G  MNPARSFGPAV
Sbjct:   12 FSPPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAV 212          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.326e-40
Identity = 90/203 (44.33%), Postives = 118/203 (58.13%), Query Frame = 3
Query:  108 AFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            A G   ++   G  +A LAE I T LFVFAGVGSA+A  K+         GL A+A+ H   + V V+ G ++SGGH+NPAVT GLA  G+IT+     Y  AQLLGS +A  LL  +      VP H                  TF L++ VYAT  DP++ ++G + P+ +G +VGAN+LA GPFSG  MNPARSFGPA+
Sbjct:    5 ALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPAL 206          
The following BLAST results are available for this feature:
BLAST of FC875453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
TIP31_ARATH1.189e-5250.72Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP32_ARATH1.553e-5250.24Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIPA_PHAVU7.708e-5248.79Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_ORYSJ7.708e-5248.50Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE6.525e-5148.50Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP32_MAIZE1.607e-4947.52Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP41_ARATH7.466e-4748.28Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ4.239e-4247.64Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ2.748e-4145.54Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE2.326e-4044.33Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404B04EF CTVClemen1 Citrus clementina cDNA clone C31404B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875453 ID=FC875453; Name=FC875453; organism=Citrus clementina; type=EST; length=715bp
GGTGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTCTTAAGAAAGAC
TCGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAAT
GGCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCA
AGGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGC
GTTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGA
TCCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTG
TCGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCC
GTCACTTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCAT
CTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCC
TCAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCT
GGAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGG
TTTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCAT
TGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATC
CTGGCCGCCGGCCCATTCTCCGGTGGTTTCATGAACCCGGCCCGTTCCTT
CGGGCCTGCCGTTGC
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