FC875453

Overview
NameFC875453
Unique NameFC875453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875453_ssr26 microsatellite FC875453_ssr26:26..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 86/199 (43.22%), Postives = 122/199 (61.31%), Query Frame = 3
Query:  117 RFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +F    S+ + + Y++EFIST  FV A VGS ++  K+ A     P G++  AI +  AL  +V I  N+SGGHVNPAVTF +A+ G+I++ T +FYW +Q++ S++A  +LKV      VP +                   F LVYTV+ TA+DP++G    + PI IGF+ GAN+LAAGPFSGG MNPA +FG A+
Sbjct:   12 KFQGVLSMNALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAM 209          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 91/204 (44.61%), Postives = 121/204 (59.31%), Query Frame = 3
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG-LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +A G   ++   G  +A +AE + T LFVF+GVGSA+A  K+         GL A+A  H   + V V+ G ++SGGH+NPAVT GLA GG IT+     Y  AQLLGS +A  LL  +TGG  AVP H                  TF L++ VYAT  D ++ ++G + P+ +G +VGANILA GP+SG  MNPARSFGPA+
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTI-MGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVD-RRRAVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPAL 205          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.004e-37
Identity = 91/204 (44.61%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  132 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG-LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVY--------ATAADPKKGSLGT-IAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            FS  S ++YLAEFIST LFVF  VGSAI+   +T       +G LVA A+   F LF AV I A++SGGHVNPAVTF  A+GG+I + + +FYW +QLLG+  A   L + + G  VPT                   TF LVYTV+        +   D K+    T +  +A+G   GA +LAAG  +G  MNPARSFGPAV
Sbjct:   14 FSAPSLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAV 217          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.466e-34
Identity = 87/212 (41.04%), Postives = 112/212 (52.83%), Query Frame = 3
Query:   99 MAIAFGRFDDSFS------LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            MA    +  DSF       +G  +A LAE + T LFVF GV +A+A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT GL + G IT L  + Y  AQLL S  A  LL+ ++GG+  P H                  TF L++  YA   DP +  +  I P+  G IVGAN LA G F+G  MNPARSFGPA+
Sbjct:    1 MAKLMNKLVDSFEHDEIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAL 211          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.109e-33
Identity = 81/193 (41.97%), Postives = 108/193 (55.96%), Query Frame = 3
Query:  138 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +G  +A LAE + T LFVF GV +++A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT G+ + G IT L  + Y  AQLL S +A  LL+ ++GG+  P H                  TF L++  YA   DP +  + TI P+  G IVGAN LA G F+G  MNPARSFGPA+
Sbjct:   22 VGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAM 213          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 82/192 (42.71%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  141 GSFKAYLAEFISTLLFVFAGVGSAIAFN-KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            G  +A LAE + T +FVF GV + +A      A AA+  + L  +AI    A  V V  G ++SGGH+NPAVT  L   G IT      Y  AQLL S +A  LL+ +TGG+A P H                  TF L++ VYAT  DP + S+    P+  G IVGAN +A G FSG  MNPARSFGPA+
Sbjct:   17 GCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDP-RSSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPAL 207          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 80/189 (42.33%), Postives = 103/189 (54.50%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            F+  L E + T LFVF GVG+A+  +  T   +     L A+A+     + V    G +ISGGHVNPAVT  LA+GG +T+     Y  AQ+L S  A FLL+ +TGGLA P H                  TF L++ +YAT  DP+K  L    P+  G +VGAN +A    SG  MNPARSFGPAV
Sbjct:   18 FRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAV 204          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 76/203 (37.44%), Postives = 105/203 (51.72%), Query Frame = 3
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +  G   +++  G  +A   E + T LFVF GV S I   K  A  A + + + A A+     + V    G ++SGGH+NPAVT  LA+GG IT+     Y  AQL GS +A  LL+ +TGG A P H                  TF L+  + AT  DP++ +     P+  G +VGAN +A G  +G  MNPARSFGPA+
Sbjct:    9 LELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGK-AAGGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPAL 210          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 76/194 (39.18%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +KA  AEF++TL+FV  GVGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY IAQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G+IA +AIGF V    L A  ++G  MNPARSFGPAV
Sbjct:   35 WKAVSAEFLATLIFVLLGVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAV 222          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 76/197 (38.58%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSI----VASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEFI+TLLF++  V + I   K T     D  GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I         +K     L    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV
Sbjct:   37 YRALIAEFIATLLFLYVTVATVIGHKKQTGPC--DGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 230          
The following BLAST results are available for this feature:
BLAST of FC875453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
TIP51_ARATH3.968e-4043.22Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP43_ORYSJ5.182e-4044.61Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE7.004e-3744.61Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP41_MAIZE9.466e-3441.04Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_MAIZE2.109e-3341.97Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ2.754e-3342.71Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE3.597e-3342.33Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ1.157e-3137.44Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
AQP4_MOUSE1.239e-2539.18Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
PIP27_ARATH1.370e-2438.58Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]

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Properties
Property NameValue
Genbank descriptionC31404B04EF CTVClemen1 Citrus clementina cDNA clone C31404B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875453 ID=FC875453; Name=FC875453; organism=Citrus clementina; type=EST; length=715bp
GGTGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTCTTAAGAAAGAC
TCGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAAT
GGCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCA
AGGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGC
GTTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGA
TCCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTG
TCGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCC
GTCACTTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCAT
CTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCC
TCAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCT
GGAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGG
TTTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCAT
TGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATC
CTGGCCGCCGGCCCATTCTCCGGTGGTTTCATGAACCCGGCCCGTTCCTT
CGGGCCTGCCGTTGC
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