FC875453

Overview
NameFC875453
Unique NameFC875453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875453_ssr26 microsatellite FC875453_ssr26:26..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 72/203 (35.47%), Postives = 105/203 (51.72%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTA------DAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG++    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV
Sbjct:   35 YRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAV 236          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 72/203 (35.47%), Postives = 105/203 (51.72%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVT GL L  +++++  + Y  AQ LG+I    L+K     L        +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV
Sbjct:   38 YRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAV 239          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 71/194 (36.60%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +KA  AEF++ L+FV   +GS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V                     TF LV+T++A+    +    G+IA +AIGF V    L A  ++G  MNPARSFGPAV
Sbjct:   35 WKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTM--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAV 222          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 72/197 (36.55%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++ +LFVF  +GSA+ FN       TA AA D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT  D ++  LG   P+AIG  V    L A  ++G  +NPARSFG +V
Sbjct:   11 WRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSV 203          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 72/194 (37.11%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++   AE I TLL V  G GS         D       +V IA+  GF +   V    ++SG H+NPAVT GL + G I+IL  IFY I Q +G+I  S +LKV+T     G L +   +                 TF L+  V +   D +K +LG  AP+A+G  +    LAA  ++G  MNPARSFGPAV
Sbjct:   26 WRCLAAELIGTLLLVLIGTGSCTGVQISEGDV------VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLCMT--SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV 210          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 70/192 (36.46%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++  LFVF  +GSA+ FN             V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVAS +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARSFG AV
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAV 201          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 68/192 (35.42%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++T LFVF  +GSA+ F     +        V +++  G ++        +ISG H+NPAVT GL L  QI+I   + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARSFG AV
Sbjct:   11 WRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAV 201          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 67/196 (34.18%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG----LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++ +LFVF  +G+A+ FN    + A    G    +V +++  G ++        ++SG H+NPAVT G  L  QI+IL  + Y IAQ LG++VA+ +L  +T GL   ++  +                  TF LV  V A   D ++  +    P+AIG  V    L A  ++G  MNPARSFG AV
Sbjct:   11 WRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA-VTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNPARSFGSAV 205          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 69/197 (35.03%), Postives = 102/197 (51.78%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++ +LF+F  +GSA+ F+       T  A  D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  I Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT    ++  LG   P+AIGF V    L A  ++G  +NPARSFG +V
Sbjct:   11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSV 204          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++  LFVF  +GSA+ FN             V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARSFG AV
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAV 201          
The following BLAST results are available for this feature:
BLAST of FC875453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PIP25_ORYSJ7.518e-2335.47Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ORYSJ7.518e-2335.47Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
AQP4_HUMAN7.518e-2336.60Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP1_CANFA2.857e-2236.55Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP_CICVR4.873e-2237.11Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP1_RAT4.873e-2236.46Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_HUMAN6.364e-2235.42Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQPA_RANES8.312e-2234.18Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_SHEEP1.086e-2135.03Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE1.086e-2135.94Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31404B04EF CTVClemen1 Citrus clementina cDNA clone C31404B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875453 ID=FC875453; Name=FC875453; organism=Citrus clementina; type=EST; length=715bp
GGTGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTCTTAAGAAAGAC
TCGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAAT
GGCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCA
AGGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGC
GTTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGA
TCCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTG
TCGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCC
GTCACTTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCAT
CTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCC
TCAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCT
GGAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGG
TTTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCAT
TGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATC
CTGGCCGCCGGCCCATTCTCCGGTGGTTTCATGAACCCGGCCCGTTCCTT
CGGGCCTGCCGTTGC
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