FC875453

Overview
NameFC875453
Unique NameFC875453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 67/197 (34.01%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++T LF++  + + +  NK  +  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY   Q LG+I  + ++K    GL + +    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVNKSASKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 246          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 70/197 (35.53%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++T LF++  V + +  +K T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY I Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+
Sbjct:   57 YRAGIAEFVATFLFLYITVLTVMGVSKSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 250          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 69/197 (35.03%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++T LF++  V + +  N  T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    GL   T    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+
Sbjct:   53 YRAGIAEFMATFLFLYITVLTVMGVNNSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 246          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 61/185 (32.97%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  159 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            LAEF++T   +FAG+G+     K  A           +A+  G A+   V    ++SG H+NPAVT G A+ G+        Y +AQ   +  AS +L+++ GG   P                    TF L++ + A A D +  ++G +A +A+G  +  N+L AGP SG  MNPARS GPA+
Sbjct:   60 LAEFLATFFLMFAGLGAITVEEKKGAVT------FPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPAL 236          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 67/199 (33.67%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  135 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            SL   KA  AEF++TL+FVF G+ SA+ +          PS L   + IA+  G A+         +SGGH+NPA+T  L +G QI++L  +FY +AQL+G+I  + +L  +  G A   +  ++                 TF L   ++++    +   +G+ A ++IG  V    L    F+G  MNPARSFGPAV
Sbjct:    7 SLAFLKAVFAEFLATLIFVFFGLASALKW----------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAV 194          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 70/199 (35.18%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  135 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAV-PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            S+   +A LAEF++TLLFVF G+GSA+ +       A  P  ++ IA+  G  +   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T     G LAV   HN                 T  LV  ++A+  + +  +LG+ A ++IGF V    L    F+G  MNPARS  PAV
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHN---NATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAV 193          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 66/198 (33.33%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTH-----NXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF +TLL V   V + I   + + +     +G++ IA   G  +FV V   A ISGGH+NPAVTF + L  ++++     Y +AQ +G++  + L + + GG     H                       TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA  P +G  +NPARS GPA+
Sbjct:   34 YRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPAL 227          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 66/197 (33.50%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  147 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 246          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 72/208 (34.62%), Postives = 101/208 (48.56%), Query Frame = 3
Query:  114 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            GRF  S+     +  + E + + LF+F G  S I  +  T        GL+  A+ HG AL + +A   NISGGH NPAV+  + + G +  +  I YWI+Q+ G ++ + L KVV+         G A                      T  LV  V   A + K  ++G +AP +IGF V  +ILA G  SG  MNPAR+FGPAV
Sbjct:   24 GRFRVSWYEQYIQPCVVELLGSALFIFIGCLSVIENSPDT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQIFGGLIGAALAKVVSPEERFWNASGAAFAI--VQEQEQVTEALGVEIILTILLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAV 219          
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 69/193 (35.75%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  159 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            + E + + LF+F G  S I  +  T        GL+  A+ HG AL + +A   NISGGH NPAV+  + + G +  +  I YWI+QL G ++ + L KVV+         G A                      T  LV  V   A + K  ++G +AP +IGF V  +ILA G  SG  MNPAR+FGPAV
Sbjct:   39 IVELVGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAI--VQEQEQVAEALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAV 219          
The following BLAST results are available for this feature:
BLAST of FC875453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PIP13_ORYSJ3.492e-2034.01Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_MAIZE3.492e-2035.53Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ3.492e-2035.03Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
NIP14_ORYSJ3.492e-2032.97Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_PIG3.492e-2033.67Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP2_MOUSE3.492e-2035.18Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
PIP28_ORYSJ5.957e-2033.33Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE5.957e-2033.50Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
AQP8_NOTAL7.780e-2034.62Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
AQP8_MOUSE7.780e-2035.75Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404B04EF CTVClemen1 Citrus clementina cDNA clone C31404B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875453 ID=FC875453; Name=FC875453; organism=Citrus clementina; type=EST; length=715bp
GGTGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTCTTAAGAAAGAC
TCGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAAT
GGCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCA
AGGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGC
GTTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGA
TCCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTG
TCGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCC
GTCACTTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCAT
CTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCC
TCAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCT
GGAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGG
TTTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCAT
TGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATC
CTGGCCGCCGGCCCATTCTCCGGTGGTTTCATGAACCCGGCCCGTTCCTT
CGGGCCTGCCGTTGC
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