FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875456_ssr14 microsatellite FC875456_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:21..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.795e-63
Identity = 120/209 (57.42%), Postives = 146/209 (69.86%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            KFFVGGNWKCNGT E + K+VS LN                   ++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++    VILGHSERR ++ E +EF+G K AYALSQ LKV+AC+GE LE+REAG T +V   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S ++A+  RIIYGGS
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFI--YIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGS 254          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.977e-62
Identity = 122/209 (58.37%), Postives = 144/209 (68.90%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            KFFVGGNWKCNGT + + K++S LN                   ++  VKSSL     ++ QN WV KGGAFTGEIS E L +L    VILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T +V  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGS
Sbjct:   65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFV--YIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGS 271          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.186e-61
Identity = 120/209 (57.42%), Postives = 145/209 (69.38%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            KFFVGGNWKCNGT + + K+VS LN  +                +L  VKSSL     ++ QN WV KGGAFTGEIS E L ++    VILGHSERR ++ E ++F+G K AYAL++GL VIAC+GE LE+REAG T +V   Q KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R+WL  N S E+A+ TRIIYGGS
Sbjct:   64 KFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFL--YLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGS 270          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 119/212 (56.13%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKF VGGNWK NG    +  +  VL  G                 +L L +S L     VAAQNC+    GAFTGEIS  ML +L I  VILGHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGS
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAP--YLTLARSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.277e-57
Identity = 113/211 (53.55%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   40 GRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GRKFFVGGNWK NG  + ++++ + LN  +                +L   +S L P   VAAQNC+    GAFTGEIS  M+ +  +  VILGHSERR +  E +E +G KVA+AL  GL VIAC+GE L++REAG T +VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P QAQEVH +LR+WL  N S  +A + RIIYGGS
Sbjct:    3 GRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTI--YLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.717e-56
Identity = 115/213 (53.99%), Postives = 138/213 (64.79%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKF VGGNWK NG   ++ +IV+ L +G                 +L  VK+ +     VAAQNCW    GAFTGEIS  M+ ++ +  VILGHSERR I  E +E V +KVA+AL  GLKVIAC+GETLE+RE+G T EVV  Q KA+   +   W NIVLAYEPVWAIGTGK ATP QAQ+VH  LR WL AN S  ++ A RI YGGS
Sbjct:    1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAI--YLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 111/210 (52.86%), Postives = 139/210 (66.19%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  + + ++++ LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +     V+LGHSERR +  E +E +G KVA+ALS+GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGS
Sbjct:    4 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.372e-55
Identity = 111/210 (52.86%), Postives = 139/210 (66.19%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  + + ++++ LN G+                +L   +  L   F V+AQNC+    GAFTGEIS  M+ +     VILGHSERR +  E +E +G KVA+ALS+ + VI C+GE L+QREAG T +VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+WL  N S ++A + RIIYGGS
Sbjct:    4 RKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTI--YLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 110/210 (52.38%), Postives = 138/210 (65.71%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +     V+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGS
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 110/210 (52.38%), Postives = 138/210 (65.71%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +     V+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGS
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGS 212          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE6.795e-6357.42Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH1.977e-6258.37Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN2.186e-6157.42Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA2.262e-5856.13Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPISB_DANRE7.277e-5753.55Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_BOMMO4.717e-5653.99Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_RABIT1.051e-5552.86Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_XENTR1.372e-5552.86Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_PONAB2.341e-5552.38Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR2.341e-5552.38Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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