FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACC2 (Triosephosphate isomerase OS=Bacillus cereus (strain G9842) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 93/213 (43.66%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++  V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 89/214 (41.59%), Postives = 124/214 (57.94%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVK-KGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V ++   L+                   F+  V   L      V AQN  V+ + GA TGE++ E LV      V++GHSERR I+ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGS
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 89/214 (41.59%), Postives = 124/214 (57.94%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVK-KGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V ++   L+                   F+  V   L      V AQN  V+ + GA TGE++ E LV      V++GHSERR I+ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGS
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 91/213 (42.72%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLV---KSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N      +++ + L                    FL L    K        + AQNC  +  GA+TGE+SA ML       VI+GHSERR    E N  V  +V  AL++GL VI CVGETL +RE+G T ++V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R  +        A A RI YGGS
Sbjct:    2 RKKIVVGNWKMNNGVAASEQLAADLLAA--LGSSFTGCDVGIAPTFLSLTTAGKVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 92/214 (42.99%), Postives = 120/214 (56.07%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGS
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 92/214 (42.99%), Postives = 120/214 (56.07%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGS
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 92/214 (42.99%), Postives = 120/214 (56.07%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGS
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 93/214 (43.46%), Postives = 119/214 (55.61%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V  ++  L   Q                F+  V   L      V AQN  V+   GA TGEI+   L +     V++GHSERRLIL E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGS
Sbjct:    2 RRPLVAGNWKMHGTHSSVADLIKGLR--QLALPSGVDVAVMPPCLFISQVVQGLAGKAIGVGAQNSAVEPMQGALTGEIAPSQLADAGCGMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 90/214 (42.06%), Postives = 116/214 (54.21%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK    GNWK N T +E  + V  L +G+                  G+V+++      VAAQN   ++ GAFTGE+S  ML  L +  VI+GHSERR    E +E V  KV  A   GLK I CVGE+L QRE G T E+V  Q K     +S+      V+AYEP+WAIGTGK AT  QA+EV   +R+ +      ++A A RI YGGS
Sbjct:    1 MSRKVIAAGNWKMNKTPKEAVEFVQAL-KGRVADADTEVVVGVPFVCLPGVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKVHAAFKYGLKPIICVGESLTQREQGVTAELVRYQVKIALLGLSAEQVKEAVIAYEPIWAIGTGKTATNEQAEEVCGIIRECIKELYGQDVAEAIRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 85/213 (39.91%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVS-VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T EE   + S V N  +                 L  V   +     + AQN + K+ GAFTGEISA ML ++ +  VI+GHSERR    E N+ + DKV  +L+ GL  + C GETL QREAG  +  V AQ       +S   +  +V+AYEP+WAIGTG  A+  QAQE+H ++R+ L +     +A    I+YGGS
Sbjct:    2 RKKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISLANGLTPLFCCGETLAQREAGIHINFVNAQLTESLFHLSPEDFKKVVIAYEPIWAIGTGVTASDEQAQEMHAKIREHLASKYGAAVADEISILYGGS 214          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACC22.278e-3443.66Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_PSEPK2.975e-3441.59Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP12.975e-3441.59Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_CHLCH2.975e-3442.72Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_PSEAE3.885e-3442.99Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB3.885e-3442.99Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA83.885e-3442.99Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA73.885e-3443.46Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_CLOTH3.885e-3442.06Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_CYTH36.627e-3439.91Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
back to top