FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACC0 (Triosephosphate isomerase OS=Bacillus cereus (strain AH820) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 92/213 (43.19%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++  V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACAN (Triosephosphate isomerase OS=Bacillus anthracis GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.476e-33
Identity = 92/213 (43.19%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++  V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEVVSPAAAEAVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33
Identity = 87/212 (41.04%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N    E  + ++ +                       LV+ +      VAAQN   +  GAFTGE+S  ML +L +  V+LGHSERR +  E NE V  K   A +  L  I CVGETL+QREA  TM +V  Q K A+A   +   +  ++AYEPVWAIGTGK AT  QA EV  E+RK +   TS ++A    I YGGS
Sbjct:    2 RKKVIAGNWKMNKVLSEAGEFMNSVVPKAPKGNDVEAIVCAPFPFLSKLVEQAKGSEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 88/214 (41.12%), Postives = 120/214 (56.07%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+ FV GNWK +G    +K +V+ LN  +                +L   K+ L  G   +  QN  ++   GA+TGE SA ML ++    VILGHSERR I  E ++ +  KV  AL  GL  I CVGETLE+RE+G    V++ Q  A+   V    ++++V+AYEPVWAIGTGK A+  QAQ+VH  +R   LA  +P +A    I YGGS
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLN-AKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIR-GQLAKLNPSVAEKVIIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 91/213 (42.72%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++  V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATQGTDLKVGAQNMHFEKNGAFTGEISPVALSDLKVSYVVLGHSERREMFAETDETVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEMY (Triosephosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 88/213 (41.31%), Postives = 117/213 (54.93%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVK-KGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V +++  L   Q                   +V+        V AQ+C  + + GA TGE++   LV+     V++GHSERRLIL E +E V  K A     GL  + CVGET EQREA +T+ VV  Q  A+ D   V + +N V+AYEPVWAIGTG  ATP QAQEVH  +R   +A    ++A+  RI+YGGS
Sbjct:    2 RRPLVAGNWKMHGTRASVAELIEGLRR-QELPVEVDVAVFPSSLHVTQVVEGLAGKAVKVGAQDCAAQVEQGALTGELAVSQLVDGGCELVLVGHSERRLILGESDEVVVSKFAAVQKAGLTPVLCVGETREQREANATLGVVGGQLAAVIDALGVQALNNAVVAYEPVWAIGTGLTATPEQAQEVHAAIRA-QVAQLDAQVASELRILYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_NITEC (Triosephosphate isomerase OS=Nitrosomonas eutropha (strain C91) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 92/216 (42.59%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R  FV GNWK  G   + +++++ +  G                 +L   +S L+ G HVA   QN      GA+TGE+SA ML +     VI+GHSERR +  E N+ V +K   A  Q L  I CVGETL QREA  T +V+A Q  A+     V++    V+AYEPVWAIGTG+ ATP QAQ+VH  +R  + A+ S EIAA  +I+YGGS
Sbjct:    1 MTRAGFVAGNWKMYGNLVQNQELLAAIVLG-IPSLQNASCAVCVPYPYLAQAQSVLK-GTHVAWGGQNISQHHQGAYTGEVSAGMLTDFGCRYVIVGHSERRTLYGEDNQMVAEKFHSAQEQSLVPILCVGETLAQREANETEQVIARQLDAVIGLVGVNAIKQSVIAYEPVWAIGTGETATPQQAQDVHAFVRNRIAAHNS-EIAADIQIVYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 81/213 (38.03%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  + GNWK N + E    +V  +  G                 ++  V++ +     ++ AQ+  + K GAFTGE+S +M+ +     VI+GHSERR +  E NE V  KV  AL+  L  + C+GE LE R++G T EVV+ Q +A+ D V   ++ +I++AYEPVWAIGTG  ATP QAQ+ H  +R  +LA     ++  T I+YGGS
Sbjct:    2 RQVIIAGNWKMNASKEATNILVMDILSGMVDVKSKVIICVPFP--YMAQVEALVGCSQLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGELLEDRDSGKTQEVVSEQIQAVIDLVGIDAFKDIIVAYEPVWAIGTGITATPQQAQDTHAFIRS-MLAKYDDNVSQITSILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR G   V AQN + K  GA+TGE+SA ML + +   V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T +V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L+   +   A    +IYGGS
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEE-LIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPC (Triosephosphate isomerase OS=Legionella pneumophila (strain Corby) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR G   V AQN + K  GA+TGE+SA ML + +   V++GHSERR   +E   FV  K  +    G+  I CVGETL +RE G T +++A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L+   +   A    +IYGGS
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEE-LIGFDCAAQVAVMPPSIYIPKVRDCLRTGRIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQIIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGS 211          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACC01.130e-3343.19Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACAN1.476e-3343.19Triosephosphate isomerase OS=Bacillus anthracis GN... [more]
TPIS_OCEIH2.518e-3341.04Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_THICR3.289e-3341.12Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_BACCN3.289e-3342.72Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_PSEMY4.296e-3341.31Triosephosphate isomerase OS=Pseudomonas mendocina... [more]
TPIS_NITEC7.327e-3342.59Triosephosphate isomerase OS=Nitrosomonas eutropha... [more]
TPIS_VESOH9.570e-3338.03Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_LEGPH9.570e-3340.09Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPC9.570e-3340.09Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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