FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 87/205 (42.44%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK N T  E   + + + E                   L  V   +   G  + AQNC  +  G FTGE+S  ML       VILGHSERR +  E N  V  KV  AL++GL VI CVGETL++RE G T ++V AQ       V+  S +V+AYEPVWAIGTGK AT  QAQEVH  +R  +      + A   RI YGGS
Sbjct:    3 GNWKMNNTIAESVDLATAIAEKVGADGVQCEVGIAPTFPALYEVCKVIEWSGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIRAKVTELYGQKAADHLRIQYGGS 207          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 84/214 (39.25%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK N +  E       +++ L EG                    ++  S      + AQNC  +  GAFTGE+SA M++ +    VI+GHSERR    E N  V  ++  ALS+GL VI CVGETL +RE+G    V+++Q +   D +   S IV+AYEPVWAIGTGK A+ AQA+EVH  +R  +        +   RI YGGS
Sbjct:    2 RRKIVVGNWKMNNSVAESVQLATDVLAALGEGFSGCEVGIAPTYLALDATEKVIAES---EVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAYEPVWAIGTGKTASSAQAEEVHLFIRTLVTGLYGQTASEKVRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 84/211 (39.81%), Postives = 116/211 (54.98%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF-HVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK NG+ E  K ++  +   +                +L  V+S++      + +QNC   + GA+TGE+SA+M  +++   VILGHSERR +  E +E +  KV  A+  GL  I CVGETL  RE+G   EV   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR   +    P+IA   RI+YGGS
Sbjct:    2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFP--YLQSVESAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRN-NIRKHFPQIADKIRILYGGS 209          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 83/212 (39.15%), Postives = 117/212 (55.19%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK NG+ E VK++   +N  +                   LV + +  G     Q       GAFTGE+ A+++  L    V++GHSERR I  E N+ V  K A A   GL  I CVGE+  ++E G T ++VAAQ  A+ ++  V++  + V+AYEPVWAIGTGK A+P QAQ VH  +R   +A+ + ++A    I+YGGS
Sbjct:    4 RKAMVAGNWKMNGSLELVKQMSDAINNVKSNEIDIVLFPPFP------LVSAMIASGVSTGTQTVSENTPGAFTGEVDAQLIKELGAQYVLVGHSERRSIYKESNDVVAAKFARAQQVGLTPILCVGESESEQENGKTEQIVAAQIDAVIEKLGVAALKDSVIAYEPVWAIGTGKTASPEQAQSVHKFIRD-KIASLNSDLAQGLTILYGGS 208          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/214 (39.72%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG+ + VK++V  + E                  +L  V           AQN    + GA+TGEISAEM  ++    V++GHSERR +  E +     KV   L  GL  + CVGETL +REA     VVA Q ++    +AD    WS +V+AYEPVWAIGTGK AT   AQ +H E+RK L    +P  A    ++YGGS
Sbjct:    2 RRRIVAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGETLAEREADQAEAVVAEQVRSGLSVVAD--GQWSRVVVAYEPVWAIGTGKTATADDAQAMHSEIRKVLDGMNAP--ANEISVLYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR G   V AQN + K  GA+TGE+SA ML + +   V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T +V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L+   +   A    +IYGGS
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQI-EKLIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_COXBU (Triosephosphate isomerase OS=Coxiella burnetii GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/215 (39.53%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+  V GNWK +G+ E V +++  L  G                      ++ +R      AQ+    + GA+TGE+SA ML +     VI+GHSERR    E NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP+QA+EVH  LR   L      +A +TR++YGGS
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRD-QLHRQDATLAESTRLLYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_COXBR (Triosephosphate isomerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/215 (39.53%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+  V GNWK +G+ E V +++  L  G                      ++ +R      AQ+    + GA+TGE+SA ML +     VI+GHSERR    E NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP+QA+EVH  LR   L      +A +TR++YGGS
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRD-QLHRQDATLAESTRLLYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_COXBN (Triosephosphate isomerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/215 (39.53%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+  V GNWK +G+ E V +++  L  G                      ++ +R      AQ+    + GA+TGE+SA ML +     VI+GHSERR    E NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP+QA+EVH  LR   L      +A +TR++YGGS
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRD-QLHRQDATLAESTRLLYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTR (Triosephosphate isomerase OS=Chlamydia trachomatis GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 81/222 (36.49%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   10 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ +  V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T +++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGS
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFISSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGS 234          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLTE9.570e-3342.44Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_PELPB1.250e-3239.25Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPIS_HAHCH1.250e-3239.81Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_PSEHT1.632e-3239.15Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_MARAV1.632e-3239.72Triosephosphate isomerase OS=Marinobacter aquaeole... [more]
TPIS_LEGPL1.632e-3240.09Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_COXBU1.632e-3239.53Triosephosphate isomerase OS=Coxiella burnetii GN=... [more]
TPIS_COXBR1.632e-3239.53Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_COXBN1.632e-3239.53Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_CHLTR1.632e-3236.49Triosephosphate isomerase OS=Chlamydia trachomatis... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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