FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 82/214 (38.32%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+  + GNWK N   E    +   + +                    G+  + +     + AQN +  + GAFTGE++A ML ++    VILGHSERR ++ E +  V  K+  AL+  L  I CVGETLEQREA  T  V+  Q +   + +  +  +NIV+AYEPVWAIGTGK A+  QA+ VH  +R+ L    S E+A   RI YGGS
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPA (Triosephosphate isomerase OS=Legionella pneumophila (strain Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  L+ G   V AQN + K  GA+TGE+SA ML + +   V++GHSERR   +E   FV  K  +    G+  I CVGETL +RE G T +V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L+   +   A    +IYGGS
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEE-LIGFDCAAQVAVMPPSIYIPKVRDCLKTGKVVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTB (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 81/222 (36.49%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   10 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ +  V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T +++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGS
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFLSSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGS 234          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTA (Triosephosphate isomerase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 81/222 (36.49%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   10 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ +  V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T +++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGS
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFISSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGS 234          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT2 (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 81/222 (36.49%), Postives = 116/222 (52.25%), Query Frame = 1
Query:   10 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ +  V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T +++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGS
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFLSSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGS 234          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK   T  E   +V  L  G                    +          + AQN + +  GAFTGE+S  MLV++    VI+GHSERR    E + FV  K+  AL+ GL+ I CVGE+  QR+AG    +V AQ +A    V     +N+V+AYEP+WAIGTG  ATPA AQ +H  +R  L      EIAA  RI YGGS
Sbjct:    6 IAGNWKMYKTVGEATTLVRDLLAGLGELSDREAIVCPPFTALAAVAALVADSPLGLGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 87/209 (41.63%), Postives = 112/209 (53.59%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            V GNWK NG+   V ++V+ L   +                +L L K +      H+ AQN  V   GAFTGE SAEML ++    +I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      + +  +V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGS
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRT-ELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 85/211 (40.28%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N    E   + S + E                   L  V   +      + AQNC  +  GA+TGE+S  ML +L    +I+GHSERR    E N  V  ++  AL  G++VI C+GETLE+REAG T  +V AQ +     +    N+VLAYEPVWAIGTGK ATP QA  VH  +R  +        A   RI YGGS
Sbjct:    2 RKKIVVGNWKMNKNVAEGVALASSILENLDGGKMACEVGIAPAYPVLSEVGRVIEGSDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDMYGEADAEDIRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PELLD (Triosephosphate isomerase OS=Pelodictyon luteolum (strain DSM 273) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 84/211 (39.81%), Postives = 112/211 (53.08%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK N T  E   + + +                     L  V  +L   G  + AQNC  +  GA+TGE+S  ML  +    VI+GHSERR    E +E V  ++   L+ G+KVI CVGETL +RE G T  VV+ Q       V+  +++V+AYEPVWAIGTGK A+  QAQEVH  +R  +      E++ A RI YGGS
Sbjct:    2 RRKIVVGNWKMNKTVAESTALATAVIAALGDGCSACEAGIAPTYPALDAVGRALEGSGIALVAQNCHYEDDGAYTGEVSTGMLKAVGCSYVIIGHSERRQYFGETDETVNLRIKKVLASGMKVILCVGETLAEREEGVTGTVVSRQVTEGLKGVADITDLVIAYEPVWAIGTGKTASSDQAQEVHRLIRDTVKGMYGAEVSEAVRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 82/212 (38.68%), Postives = 110/212 (51.89%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  + GNWK     +E  + ++ L +                      VK        +AA+N + K  GA+TGE+S +ML ++ +  VILGHSERR    E +EF+  KV   L  G+K I C+GE LE RE G T+EV+A Q K  + D         ++AYEPVWAIGTGK ATP  AQE H E+R  L      ++A    I YGGS
Sbjct:    2 RRLVIAGNWKMYKNNKEAVETLTQLKDLTRDVKNVDIVIGAPFTCLSDAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGS 213          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RHOBA2.132e-3238.32Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_LEGPA2.132e-3240.09Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_CHLTB2.132e-3236.49Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLTA2.132e-3236.49Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLT22.132e-3236.49Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLAA2.132e-3239.90Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_KLEPN2.784e-3241.63Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_CHLPB2.784e-3240.28Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_PELLD3.637e-3239.81Triosephosphate isomerase OS=Pelodictyon luteolum ... [more]
TPIS_FUSNN3.637e-3238.68Triosephosphate isomerase OS=Fusobacterium nucleat... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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