FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875456_ssr14 microsatellite FC875456_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:21..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 109/210 (51.90%), Postives = 136/210 (64.76%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+FFVGGNWK NG  E +++++S LN                   +L   +S L     VAAQNC+    GAFTGEIS  M+ +     VILGHSERR +  E +E +G KVA+AL   L VIAC+GE LE+REAG+T +V+ AQT+ IA+ V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR W  AN S E++ + RIIYGGS
Sbjct:    4 RRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSI--YLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 111/210 (52.86%), Postives = 134/210 (63.81%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  E + +++  LN                   +L   +S L     VAAQNC+    GAFTGEIS  M+ +  I  VILGHSERR +  E +E +G KVA+ L   L VIAC+GE LE+REAG+T +VV  QTK IAD V  W+ +VLAYEPVWAIGTGK A+P QAQEVH +LR WL AN S  +A + RIIYGGS
Sbjct:    4 RKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSI--YLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 107/210 (50.95%), Postives = 136/210 (64.76%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG    + ++++ LN  +                ++   +  L P   VAAQNC+    GAFTGEI   M+ +L    V+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  W+ +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  +    +A +TRIIYGGS
Sbjct:    5 RKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.375e-53
Identity = 106/210 (50.48%), Postives = 137/210 (65.24%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG  + + +++  LN  +                +L   +  + P F VAAQNC+    GAFTGEIS  M+ +  +  VILGHSERR +  E +E +G KV++ALS+GL V+AC+GE L++REAG T  VV   T+ IAD V  WS +VLAYEPVWAIGTGK A+P Q+QE+H +LRKWL  N S  +A + RIIYGGS
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEA--YLDFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 205.297 bits (521), Expect = 2.422e-52
Identity = 106/212 (50.00%), Postives = 133/212 (62.74%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RKFFVGGN+K NG+ E +K I+  LN  +                +L   +  ++    V AQN + KK GA+TGE SA+ L++  I   + GHSERR I  E +EFV DK  +AL QGL V+AC+GETL +REA  T+ VV  Q  AIAD+V +WS IV+AYEPVWAIGTGK ATP QAQEVH E+RKW        +A   R+IYGGS
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNM-YLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.164e-52
Identity = 109/213 (51.17%), Postives = 136/213 (63.85%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG+  + K ++  L+E                  +L  V+ SL    HVAAQNC+    GAFTGEIS  M+ ++    VILGHSERR I NE +E V +KV +AL++GL V+AC+GETL +RE+G T EV   Q  AIA+++ S   W  +V+AYEPVWAIGTGKVA+P QAQEVH  LRKW   NT   +    RIIYGGS
Sbjct:    5 RKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFV--YLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.396e-52
Identity = 108/213 (50.70%), Postives = 137/213 (64.32%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RKFFVGGNWK NG+ ++  K++ +L+E                  FL  ++ SL+   HVAAQNC+    GAFTGEIS  M+ ++    VILGHSERR I  E +E + +KV +AL++GL VIAC+GETL +RE+  T EV   Q KAIA+++ S   W  +V+AYEPVWAIGTGKVATP QAQEVH  LRKW   N    +    RIIYGGS
Sbjct:    5 RKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPSV--FLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.205e-52
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 1
Query:  178 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I  VILGHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++A+ RI YGGS
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGS 192          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.498e-51
Identity = 107/213 (50.23%), Postives = 136/213 (63.85%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RKFFVGGN+K NGT +++K IV  LN  Q                +L  VK +L +P   VAAQN + K  GAFTGEISA  L++L +  VILGHSERR  L E +EF+  K  YAL  G+ VI C GE+ + R+AG T++ V  Q  A+A  ++ W N+V+AYEP+WAIGTG VAT  QAQEVH  +R WL  N S ++A  TRI+YGGS
Sbjct:    1 MARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPAL--YLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.736e-50
Identity = 100/165 (60.61%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  178 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I  VILGHSERR I  E  E + DK+ +AL++GLKVIAC+GETL++REA  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGS
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGS 192          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ORYLA5.766e-5451.90Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPISA_DANRE9.835e-5452.86Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_PIG1.284e-5350.95Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_LATCH6.375e-5350.48Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_SCHPO2.422e-5250.00Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_SCHJA3.164e-5251.17Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_SCHMA5.396e-5250.70Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_AEDTO9.205e-5262.42Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_NEUCR3.498e-5150.23Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_CULPI1.736e-5060.61Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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