FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK NG      +  ++LN                          +      V AQ+C  K  GA TG+I+AEML N     +I+GHSERR    E +  V  K   A   G+  I C+GET  QR+AG T++++  Q        S+ +N+V+AYEPVWAIGTG   T    +++H  +R++L +  S +  A  RI+YGGS
Sbjct:    9 IAGNWKMNGLKASAAEFDAMLNGAADVATKADLLVCPPATLIAAFADKARGKKVAVGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFLTSRFSVD-GAKMRILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORAP (Triosephosphate isomerase OS=Borrelia afzelii (strain PKo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 81/214 (37.85%), Postives = 110/214 (51.40%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   +                     L  V   ++     + AQN    + GA T EIS  ML+   +  VILGHSE RL L E +E +  K+   L    K +I CVGETL++R++G T++VV +Q K   D VS      I+LAYEPVWAIGTGK AT  +A+EVH  +R  ++   S   +    I YGGS
Sbjct:    2 RKTFLAGNWKMHYTSAEASIVAKQIATEVKTLNDDFVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKIRAGLKHSFKYLILCVGETLDERDSGKTLDVVLSQVKKGLDCVSESDIKRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEIMKLYSKSASDNIIIQYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 85/218 (38.99%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N    E    V+KI   L E                   +  +    +      AQ+  V + GA+TGEISA ML  L    V++GHSERR   +E +  V  K   AL  GL  I C+GE L  REAG+ +E    Q +     +S+   + +V+AYEPVWAIGTGKVA+ A AQEV   +R  L     PE+AA  R++YGGS
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFALPEKYFEKVDVAVIPPFVDIRSVQTLVEGDKLLLTYGAQDVSVHESGAYTGEISASMLAKLGCTFVVVGHSERRQYHHEDDATVLGKAKKALEHGLTPIVCIGEGLNVREAGTHVEYNLEQLRGSLKGLSAEQIAKVVIAYEPVWAIGTGKVASAADAQEVCGAIRAELAELAGPEVAAQVRVLYGGS 218          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 72/157 (45.86%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  211 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GF +  Q+ +    GA+TGEI+  ML++     V+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   +V+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA PA+  E H  +R  L A    +  AA RI+YGGS
Sbjct:   60 GFAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 72/157 (45.86%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  211 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GF +  Q+ +    GA+TGEI+  ML++     V+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   +V+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA PA+  E H  +R  L A    +  AA RI+YGGS
Sbjct:   60 GFAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLONN (Triosephosphate isomerase OS=Clostridium novyi (strain NT) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 82/212 (38.68%), Postives = 106/212 (50.00%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  +  K+V  L                       +VK++      V AQN   ++ GAFTGE +  ML  L +  VILGHSERR    E +  +  K+  A    L  I C+GETLE+REA  T EV+A Q K     +  +  +  V+AYEP+WAIGTGK AT  QA+E    +RK +      E A   RI YGGS
Sbjct:    2 RKAIIAGNWKMNNTISQGLKLVEELKP-LVADANCDVVVCPPTLALDAVVKATEGTNIKVGAQNMHFEESGAFTGETAPAMLEELGVKYVILGHSERRQYFGENDADLNKKMKKAFEHNLTPILCIGETLEEREADVTEEVLAKQIKLDLAGLTEAQIAETVIAYEPIWAIGTGKTATSDQAEETIAFVRKTVAGMFGAEAAEKMRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BAUCH (Triosephosphate isomerase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 80/208 (38.46%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG+   V   +  L                    +L   KS L  G H+A  AQN  +   GAFTGEISA+ML ++    +I+GH ERRL   E NE + +K A   ++GL  + C+GET E+ E   T  +   Q   I + V   ++ N V+AYEP+WAI TGK A P Q Q++H  +R +L  N    IA    I YGGS
Sbjct:    8 GNWKLNGSKHMVSNFIISLRNQLSNMINCCNVAIAPPMIYLDRAKSYLT-GSHIALGAQNVDLHVSGAFTGEISAKMLKDIGAKYIIIGHIERRLYHKESNEDIANKFACLKNEGLIPVLCIGETKEENEKDQTKAICVRQLDYILNIVGTQAFKNAVIAYEPIWAIATGKSANPLQIQKIHKFIRSYLF-NHDQAIAEQVIIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 82/214 (38.32%), Postives = 113/214 (52.80%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL---LANTSPEIAAATRIIYGGS 672
            R+  + GNWK N T  E   +V  +   +                 L  VK+ L     H+ AQN + ++ GA+TGEIS  ML ++  P VI+GHSERR    E  + V  K+  AL  G+  I CVGE LE+ E G T +++  Q K     ++  S+I++AYEP+WAIGTGK AT A+A      +RK L     NT+  I   T I+YGGS
Sbjct:    2 RQIIIAGNWKMNTTLSEACTLVQGMKY-ELDQISGIQKIVCPPFISLAPVKTILDGSSIHLGAQNLFYEEKGAYTGEISPLMLQDI-CPYVIIGHSERRAYFGETGQVVNRKIKAALQAGIMPIVCVGEKLEENENGQTRQILETQMKEALAGINP-SSIIIAYEPIWAIGTGKAATAAEANNTISYIRKVLGDIWGNTASRI---TPILYGGS 209          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 70/142 (49.30%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  253 GAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GA+TGE+SAE+L + +I  V++GHSERR    E    +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGS
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGS 207          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 81/212 (38.21%), Postives = 106/212 (50.00%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N   E+  ++V  L                       +VKS       V AQN   ++ GA+TGEIS  ML +L++  VI+GHSERR   NE +E +  K+  A    +  I C GE+L +RE G T EV+  Q K A+ D R      IV+AYEP+WAIGTGK AT  QA +    +R  +        A   RI YGGS
Sbjct:    2 RKAIIAGNWKMNKNLEDALELVEELKP-LVRGAKCDVVLCPPYVCLDAVVKSVGGTNIKVGAQNMHYEESGAYTGEISPGMLKSLKVDYVIIGHSERRQYFNEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGS 212          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BRAJA2.439e-2834.95Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_BORAP2.439e-2837.85Triosephosphate isomerase OS=Borrelia afzelii (str... [more]
TPIS_NOCFA3.186e-2838.99Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_DESVV3.186e-2845.86Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH3.186e-2845.86Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_CLONN3.186e-2838.68Triosephosphate isomerase OS=Clostridium novyi (st... [more]
TPIS_BAUCH3.186e-2838.46Triosephosphate isomerase OS=Baumannia cicadellini... [more]
TPIS_DEHE14.161e-2838.32Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS3_RHIEC4.161e-2849.30Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_CLOK55.434e-2838.21Triosephosphate isomerase OS=Clostridium kluyveri ... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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