FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 88/217 (40.55%), Postives = 120/217 (55.30%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR---IIYGGS 672
            M RK    GNWK NGT E + ++ + L +G                    + +++ R G   +  Q+C  K  GA TG++SA+ML +     VI+GHSERR    E +  V  K   A + GL  + C+GETLE+REAG+T+EVV AQ   ++ D V++  N V+AYEPVWAIGTGKV T  Q  EVH  LR  L+A       AA +   ++YGGS
Sbjct:    1 MARKL-AAGNWKMNGTGEHLAELEN-LAQGDLPEGVDVLICPPATL----ISRAADRAGDIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTA-ENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVA----RFGAAGKDLPLLYGGS 206          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 78/211 (36.97%), Postives = 110/211 (52.13%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K ++ GNWK   TT+EVK+  SVLN+ +                 LGL     R    V AQ+       A TG +S E L ++ +  VI+GHSERR + +E +E +  KV   L   ++ I C+GETLE+ EA  T  V+  Q +     + S    ++++AYEPVWAIGTGK A+   AQ+    +R  L   +S  IA    I+YGGS
Sbjct:    5 KRYIFGNWKTYKTTQEVKEFFSVLNQTKLTKNPDVVFGVAPVFVHLGLANQLERNECLVLAQDANYVMNKANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATN (Triosephosphate isomerase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQAQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLDQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHRSD (Triosephosphate isomerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 79/209 (37.80%), Postives = 113/209 (54.07%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK NG++  V        +                  +L   + +L  G   + AQ       GA TGE+S  ML   ++  V++GHSERR +  E ++ V D++  AL+  L+ I CVGETLE R+AG T +VV  Q   A+A    +  + + +AYEPVWAIGTG+ ATP QAQEV   +R++  A   P +A + R+IYGGS
Sbjct:    6 IAGNWKMNGSSALVDAFGQAFADADLPESVEVVVHPPFP--YLDAARRALAGGPVKLGAQTLNPLHAGARTGEVSGRMLKEFDVEYVLVGHSERRELYRESDDDVYDRLLAALNADLRPILCVGETLEARDAGRTRDVVLRQVGHALAPLEPAQRARVTIAYEPVWAIGTGRTATPEQAQEVMAAIREY-QAGFDPALAQSMRLIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  226 AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH---FELRKWLLANTSPEIAAATRIIYGGS 672
            AQNC+ +  GAFTGE SA+++ +L    V++GHSERR I  E +  V DKVA+    GL  + C+GETL++RE+  T  V+  Q      +      +V+AYEPVWAIGTGKVATP Q  E H   F + K L   T+P       I+YGGS
Sbjct:   61 AQNCYFQAQGAFTGENSAQVVKDLGGSYVLIGHSERRAIFGEGDALVADKVAFVQGLGLTPMLCIGETLQERESAKTFRVLETQLNLGLAKADKTKPVVVAYEPVWAIGTGKVATPEQVAETHTDVFNILKALGFETAP-------ILYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACLD (Triosephosphate isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 80/212 (37.74%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N    E    V  +                       L  +       V AQN   ++ GAFTGEIS   L +L +   ++GHSERR +  E +E V  K   A   G+  I CVGETLE+REA  T E+VA Q  KA+A   +   +  V+AYEP+WAIGTGK +T   A EV   +RK + +      A + RI YGGS
Sbjct:    2 RKPIIAGNWKMNKVLSEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLTSAVKGTDLKVGAQNMHFEESGAFTGEISPAALKDLGVEYCVIGHSERREMFAETDETVNKKAHAAFKYGIVPIICVGETLEEREANKTNELVADQVKKALAGLTTEQVAASVIAYEPIWAIGTGKSSTAQDANEVCAHIRKTVASEFGQTAADSVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 77/215 (35.81%), Postives = 112/215 (52.09%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAI----ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N    +  + V+ +                       L++++      VAA+NC+ ++ GAFTGE S + L  + +  VI+GHSERR   +E +E +  K        +  I C GE+LE REAG   E V+ Q T+ +    AD+VSS   +V+AYEP+WAIGTGK A+  QAQE+   +R+ +       +A   RI YGGS
Sbjct:    2 RKPIIAGNWKMNMNPTQTTEFVNAIKANLPKFDQTESVIGAPAVDLPALLEAAKGTDLKVAAENCYFEEAGAFTGETSPKTLNEMGVDYVIIGHSERRDYFHETDEDINKKAHAIFKNNMTPIFCCGESLETREAGKAEEWVSNQVTEGLKGLSADQVSS---MVIAYEPIWAIGTGKTASADQAQEICAVVRQTVAKLYDQTVADKVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 79/217 (36.41%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N T  E +  V  +                       +          +AA+N + +  GAFTGE S   +V+L I  +I+GHSERR   +E +E +  K     + G   I C GETLE  EAG T E V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGS
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 77/214 (35.98%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N T  E +  V  +                       +          +AA+N + +  GAFTGE S   +V+L +  +I+GHSERR   +E +E +  K     + G   I C GETLE  EAG T E V+ Q +A    +S+   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGS
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLSAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATT (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SILST7.097e-2840.55Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_MYCGA7.097e-2836.97Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_FRATN7.097e-2835.92Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CHRSD7.097e-2837.80Triosephosphate isomerase OS=Chromohalobacter sale... [more]
TPIS_BDEBA7.097e-2845.39Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]
TPIS_BACLD7.097e-2837.74Triosephosphate isomerase OS=Bacillus licheniformi... [more]
TPIS_LACSS1.211e-2735.81Triosephosphate isomerase OS=Lactobacillus sakei s... [more]
TPIS_LACLM1.211e-2736.41Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLA1.211e-2735.98Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_FRATT1.211e-2735.92Triosephosphate isomerase OS=Francisella tularensi... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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