FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRAT1 (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOPH (Triosephosphate isomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 77/212 (36.32%), Postives = 109/212 (51.42%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  + GNWK N T  E  K++  L                        ++++      + A+N + ++ GA+TGEI+  ML ++ +  VI+GHSERR    E +  V  KV  AL  G+  I C GE+L QRE G T++ +  Q K     V++   +  V+AYEP+WAIGTGKVAT  QAQEV   +R  +        A A RI YGGS
Sbjct:    2 RRKIIAGNWKMNKTPSETVKLIEELKP-LVKNDDVDVVFCVPAISLTTAIEAAKGSNISIGAENMFYEESGAYTGEIAPNMLTDIGVKYVIIGHSERREYFAESDITVNKKVLKALEHGITPIICCGESLTQREQGITIDWIRQQIKIAFLNVTAEQAATTVIAYEPIWAIGTGKVATTEQAQEVCAAIRVCIGELYGETTAEAIRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAB (Triosephosphate isomerase OS=Chlamydophila abortus GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 80/216 (37.04%), Postives = 112/216 (51.85%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFH----VAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK ++ GNWK + T +E K  +SV                      L     S++  FH    + AQN      GAFTGEIS  ML   ++  V+LGHSE R I +E +  +  KV  A  +G+  + C+GETLE RE G+T  +++ Q      ++   +++++AYEPVWAIGTGKVA+    QE H   R+ L    S E A    I+YGGS
Sbjct:    1 MERKRYIFGNWKMHKTAKEAKDYLSVFCPLLEEVAPVSCVGITPAFTALHACCESIK-FFHSPLWLGAQNVHQDTSGAFTGEISLPMLKEFDVNFVLLGHSECRHIFHEEDTTIALKVGAAAREGIIPVLCIGETLEVREKGATEAMLSNQLMLGLAQLPETASVIIAYEPVWAIGTGKVASAVDVQEAHAFCREVLANIFSKEKAEEISILYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 81/216 (37.50%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSV------LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +K  + GNWK N T +E +  ++       LN  +                 L   +   +   ++ AQN    + GAFTGEISA+ML ++    VI+GHSERR    E N+ V  K   A+  GL  I CVGE+LE+ EAG T  V+  Q K   + +   S IV+AYEP+WAIGTGKVAT   AQ++     K++ + TS ++     I YGGS
Sbjct:    2 KKLLIIGNWKMNKTYDEARDFINAFSNAYALNGAKISENIEYGIAPSFTNMSLFNKELLEKTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAIENGLIPIICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAYEPIWAIGTGKVATAEVAQQI----CKFIRSITSKDLI----IQYGGS 208          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 78/217 (35.94%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N T  E +  V  +                       +          +AA+N + +  GAFTGE S   +V+L +  +I+GHSERR   +E +E +  K     + G   I C GETLE  EAG T E V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGS
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATO (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATH (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tpiA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATF (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tpiA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA     +A   +I+YGGS
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 82/214 (38.32%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   + GNWK N T +E  ++V  L                       L  VK S      V AQN   ++ GA+TGEI+ +ML  L +  VI+GHSERR   NE +E V  KV  A    L  I C GE+LE+RE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + A     +A   RI YGGS
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACME (Triosephosphate isomerase OS=Bacillus megaterium GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 83/213 (38.97%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N    E    V  + +G                 FL  LV+++      + AQN   ++ GAFTGE+S   L +L +  VILGHSERR +  E +E V  K   A   GL  I C GET E+ E   T  VVA Q  KA+A          V+AYEP+WAIGTGK +T   A EV   +R  +    S ++A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKVLSEATSFVEEV-KGAVPSPESVDSVVCAPALFLDRLVEATKGTDLKIGAQNMHFEENGAFTGEVSPVALADLGVNYVILGHSERREMFAETDETVNQKTIAAFKHGLTPIVCCGETNEEYEQDQTKTVVANQVQKALAGLTDEQVKQTVIAYEPIWAIGTGKSSTAEGANEVCAYIRSVVAEQFSQDVADAVRIQYGGS 213          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FRAT11.211e-2735.92Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CLOPH1.211e-2736.32Triosephosphate isomerase OS=Clostridium phytoferm... [more]
TPIS_CHLAB1.211e-2737.04Triosephosphate isomerase OS=Chlamydophila abortus... [more]
TPIS_MYCPU1.581e-2737.50Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_LACLS1.581e-2735.94Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_FRATO1.581e-2735.92Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATH1.581e-2735.92Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATF1.581e-2735.92Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CLOB11.581e-2738.32Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BACME1.581e-2738.97Triosephosphate isomerase OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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