FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB3 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB307-0294) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 82/217 (37.79%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   52 FVGGNWK-------CNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK        N   EE K+++                           ++ + R  + VA     V   GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTS--AGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORGA (Triosephosphate isomerase OS=Borrelia garinii GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.065e-27
Identity = 79/214 (36.92%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   +                     L  V   ++     + AQN    + GA T EIS  ML+   +  VILGHSE RL L E +E +  K+   L    K +I CVGETL +R++  T++VV  Q K   D VS      I+LAYEP+WAIGTGK AT  +A+EVH  +R  ++   S  ++    I YGGS
Sbjct:    2 RKTFLAGNWKMHYTSTEASIVAKKIATEVKTLKDDFVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLGETDEIINKKILTGLKHPFKYLILCVGETLNERDSEKTLDVVLNQVKKGLDGVSESDIKRIILAYEPIWAIGTGKTATKEEAEEVHKAIRLEIMKLYSKSVSDNVIIQYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 75/213 (35.21%), Postives = 109/213 (51.17%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLV-KSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  +  NWK N T  E +  ++ L                     L  V + +   G    AQN + +  GA+TGE+SA ML+++     I+GHSERR +  E +E V  K   A+  GL  + CVGET E+R+AG   E V+ Q +A+ + +  +S   +V AYEP+WAIGTGK A+P  AQ+    +R  L        A   R++YGGS
Sbjct:    5 RRPLMAANWKMNKTVREAQDYMAALLPRVADLAGEVDVAVFAPFTCLSEVARMAEGSGVLAGAQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGS 217          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PEDPA (Triosephosphate isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK N   +E ++ +  +                       LV  S       AA+N + +  GAFTGE S + L  + +  V++GHSERR    E +E +  K     +  +  I C GETLEQREAG T E VA Q T A+ D  +   +  V+AYEP+WAIGTGK A+  QAQEV   +R+ +       +A   RI YGGS
Sbjct:    6 IAGNWKMNKNPQETQEFLDAIKGKLPDASVVESVIAAPAIDLSTLVAFSKDEQLKTAAENSYFEDEGAFTGETSPKALNEMGVNYVVIGHSERRQYFGETDEDINKKAKAIFNNNMTPIICCGETLEQREAGETNEWVAGQITNALKDLTAEQVAASVIAYEPIWAIGTGKTASSDQAQEVCHVIRETVAKLYDQTVADKVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORRA (Triosephosphate isomerase OS=Borrelia recurrentis (strain A1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 86/216 (39.81%), Postives = 110/216 (50.93%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   + +G                 F  L K   +  G +V   AQN   +  GA T EI+  ML+   +  VILGHSE R  L E +E +  KV   L    K +I CVGETLE+RE G T++VV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGS
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDG--VYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 86/216 (39.81%), Postives = 110/216 (50.93%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   + +G                 F  L K   +  G +V   AQN   +  GA T EI+  ML+   +  VILGHSE R  L E +E +  KV   L    K +I CVGETLE+RE G T++VV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGS
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDG--VYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 86/212 (40.57%), Postives = 110/212 (51.89%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK NG+    + +V  L  G                 +L   ++ L      + AQ+    + GAFTGEIS  ML    +   I+GHSERR    E +  V  K   AL+ G+  I CVGETL +REAG T EVV  Q  A+        S +V+AYEPVWAIGTGK A+  QAQ+VH  LR+ L A +    A   +IIYGGS
Sbjct:    2 RKKLIAGNWKMNGSLAANEALVKGLRVG--VGASVCQVALCVPSVYLAQCQALLVGTAIALGAQDLSQHEVGAFTGEISGAMLQEFGVRYCIVGHSERRQYHFETDALVAAKAQRALACGITPIVCVGETLAEREAGRTEEVVKRQLAAVIHANGHCISEVVVAYEPVWAIGTGKTASIEQAQQVHSVLRQQLQAASIQ--ADRIQIIYGGS 209          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 84/214 (39.25%), Postives = 111/214 (51.87%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +G+      ++  +  G                 +L   ++ L  G  VA  AQ+   +  GAFTGE++A ML       V++GHSERR    E ++ V  K   AL  G+  + CVGETL QREAG T  VV  Q +A+ +   V     +VLAYEPVWAIGTGK AT  QAQ VH  LR  + A  +  +A    I+YGGS
Sbjct:    2 RQKLVIGNWKMHGSLAANAALLEGIQAGAGVARATLAVCAPFP--YLAQCQALLN-GSKVAWGAQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAARDA-GVAGRMAILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORBZ (Triosephosphate isomerase OS=Borrelia burgdorferi (strain ZS7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 81/214 (37.85%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   +                     L  V   ++     + AQN    + GA T EIS  ML+   +  VILGHSE RL L E +E +  K+   L    K +I CVGETL++R++G T+EVV  Q K   + VS      I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGS
Sbjct:    2 RKTFLAGNWKMHYTSAEASIVAKKIATEVKTLKDDVVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORBU (Triosephosphate isomerase OS=Borrelia burgdorferi GN=tpiA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 81/214 (37.85%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK F+ GNWK + T+ E   +   +                     L  V   ++     + AQN    + GA T EIS  ML+   +  VILGHSE RL L E +E +  K+   L    K +I CVGETL++R++G T+EVV  Q K   + VS      I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGS
Sbjct:    2 RKTFLAGNWKMHYTSAEASIVAKKIATEVKTLKDDVVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGS 215          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIB31.581e-2737.79Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_BORGA2.065e-2736.92Triosephosphate isomerase OS=Borrelia garinii GN=t... [more]
TPIS_RUBXD2.697e-2735.21Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_PEDPA2.697e-2736.54Triosephosphate isomerase OS=Pediococcus pentosace... [more]
TPIS_BORRA2.697e-2739.81Triosephosphate isomerase OS=Borrelia recurrentis ... [more]
TPIS_BORDL2.697e-2739.81Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS_RHOFD3.522e-2740.57Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_CUPTR3.522e-2739.25Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_BORBZ3.522e-2737.85Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]
TPIS_BORBU3.522e-2737.85Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
back to top