FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK      E  + +  +N                    L ++  +  P   + AQN + +  GAFTGEIS   LV+L +  V+LGHSERR++  E ++ V  K+  AL   L  + C+GETLE +E   T E +  Q T+A+ D        I++AYEPVWAIGTGK A+P +A +   ++R+ +    S ++  + +I+YGGS
Sbjct:   10 IAGNWKMYKDKNEALEFIQKVNFS-IPNSKEVETIIFAQSTLLDVLVQNQGPNLKIGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGS 216          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 73/205 (35.61%), Postives = 112/205 (54.63%), Query Frame = 1
Query:   64 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            NWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++    +++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA    ++A   +I+YGGS
Sbjct:    8 NWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDEKLAKNIKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 72/207 (34.78%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLV-KSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK NG      +  ++L                      G   K+       V AQ+C  K  GA TG++SAEML +     +I+GHSERR    E +  V  K       GL  I CVGET +QR+AG T++++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L+   + E  A  RI+YGGS
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  253 GAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GA+TGEISAE+L + +I  V++GHSERR +L +  E +  K+++AL+ G+ VI CVGE+LEQRE G   ++V  Q   IA  VS+  W + IV+AYEP+WAIGTG+ A+P  AQ +H ++R+ L   T     +   ++YGGS
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQIT--PAGSQIALLYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_THEYD (Triosephosphate isomerase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 74/212 (34.91%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFL---GLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K F+  NWK + T   V++ ++ L+E                  F+    + K  +     + AQN + +  GA+TGE+S  ML +  +  VI+GHSERR    E ++ +  K+   + +GLKVI C+GET E R+   TME++  Q +     ++S   + +AYEPVWAIGTG VAT  Q ++ H  +R   L     E A   RI+YGGS
Sbjct:    3 KKFIVANWKMHKT---VREALAFLDEFIPITKGLNGREIGIAPTFICIESVGKVLINTSIKLCAQNAFYENKGAYTGEVSPAMLKDCGVEYVIIGHSERRKYFYENDDIINKKIHACIKEGLKVIFCIGETFEDRQNNKTMEILKTQIRNGLLEINSPEALTIAYEPVWAIGTGVVATEEQIKQSHLFIRN-QLKEIYGERANEVRILYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 76/214 (35.51%), Postives = 104/214 (48.60%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N T  E ++ +  +                      G+ K        VAAQNC+ +  GAFTGE S   L  L +  VI+GHSERR   +E ++ +  K        +  I C GE+LE  EAG T E +  Q  A    +S+   S++V+AYEP+WAIGTGK A    A ++   +R  +      E+A A RI YGGS
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVRATVEKLYGKEVAQAVRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_NITOC (Triosephosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 78/209 (37.32%), Postives = 112/209 (53.59%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            V GNWK NG+    + ++  + + +                +L  ++S L+    +  AQN    + GA+TGEI+  ML +L    VI+GHSERR +  E +  V +K   A    +  I CVGETL++RE   T +VV  Q  A+ +   V++    V+AYEP+WAIGTG+ ATP QAQEVH  +R  +    S  IA    I+YGGS
Sbjct:    6 VVGNWKMNGSRAANRALLESMRK-EMEAGVTAEVAVCPPFVYLADMESLLQGSVINWGAQNLSHHEVGAYTGEIAPSMLADLGCRFVIVGHSERRTLYGETDSLVAEKAIVAQKVNIIPIICVGETLQEREQNITEQVVKRQLNAVLELAGVNALEKAVIAYEPIWAIGTGRTATPEQAQEVHALIRSHVAIQNS-GIAEELLILYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTU (Triosephosphate isomerase OS=Mycobacterium tuberculosis GN=tpiA PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/221 (36.65%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  L    V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGS
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGS 218          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTA (Triosephosphate isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/221 (36.65%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  L    V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGS
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGS 218          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBO (Triosephosphate isomerase OS=Mycobacterium bovis GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/221 (36.65%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  L    V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGS
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGS 218          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PHYAS4.600e-2734.62Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_FRATM4.600e-2735.61Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_BRASB4.600e-2734.78Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_ACIAD4.600e-2746.85Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_THEYD6.008e-2734.91Triosephosphate isomerase OS=Thermodesulfovibrio y... [more]
TPIS_STRMU6.008e-2735.51Triosephosphate isomerase OS=Streptococcus mutans ... [more]
TPIS_NITOC6.008e-2737.32Triosephosphate isomerase OS=Nitrosococcus oceani ... [more]
TPIS_MYCTU6.008e-2736.65Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCTA6.008e-2736.65Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCBO6.008e-2736.65Triosephosphate isomerase OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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