FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/214 (37.85%), Postives = 104/214 (48.60%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   + GNWK N T +E  ++V  L                       L  VK S      V AQN   ++ GA+TGEI+ +ML  L +  VI+GHSERR   NE +E V  KV  A    L  I C GE+LE+RE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGS
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/214 (37.85%), Postives = 104/214 (48.60%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   + GNWK N T +E  ++V  L                       L  VK S      V AQN   ++ GA+TGEI+ +ML  L +  VI+GHSERR   NE +E V  KV  A    L  I C GE+LE+RE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGS
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBT (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tpiA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/217 (37.33%), Postives = 115/217 (53.00%), Query Frame = 1
Query:   52 FVGGNWK-------CNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK        N   EE K+++                           ++ + R  + VA     V   GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBS (Triosephosphate isomerase OS=Acinetobacter baumannii (strain SDF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/217 (37.33%), Postives = 115/217 (53.00%), Query Frame = 1
Query:   52 FVGGNWK-------CNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK        N   EE K+++                           ++ + R  + VA     V   GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBC (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ACICU) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 81/217 (37.33%), Postives = 115/217 (53.00%), Query Frame = 1
Query:   52 FVGGNWK-------CNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK        N   EE K+++                           ++ + R  + VA     V   GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SYMTH (Triosephosphate isomerase OS=Symbiobacterium thermophilum GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 78/208 (37.50%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            V  NWK + T  E ++ ++     +                   +          + AQN   K  GAFTGE+S  MLV+     VILGHSERR +  E +E VG KV  AL  GL  I C+GETLE+++AG    V   Q  A  + ++    +N+V+AYEPVWAIGTG+   P  AQ     +R  +     PE AA  RI YGGS
Sbjct:    6 VAANWKMHKTQPEARQFLADFLPREAGMSGVEIVICPPFTALAAVAGGLTGTRVGLGAQNMSDKPSGAFTGEVSGAMLVDAGCRYVILGHSERRRLFGESDEVVGAKVRAALQHGLIPILCIGETLEEQQAGEADAVNRRQLLAGLEGLTPEQVANLVIAYEPVWAIGTGRNCDPGDAQARIAAVRAVVAEAFGPEAAARVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 80/212 (37.74%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  + GNWK N T  E    V  +                       L+++       + AQ    +  GAFTGEIS + L ++ +  VI+GHSERR +  E +E V  KV  A +  L  I C GET E+REAG    VV  Q +     +S       V+AYEP+WAIGTGK AT   A E    +R+ + AN S E A A RI YGGS
Sbjct:    2 RKPIIAGNWKMNKTIGEAVDFVEAVKANVPAQATVDSVVCAPALFLDRLLQAVKGTELKIGAQTMHFEDNGAFTGEISPKALSDMGVHYVIIGHSERREMFAETDETVNKKVHAAFAHHLVPIMCCGETAEEREAGKMEAVVKEQVENGLAGLSEEQVKQTVIAYEPIWAIGTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 78/209 (37.32%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG---FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK NG   ++ +  ++L  G                  L      L  G   F V AQ+C     GA TG++SAEMLV+     +I+GHSERR    E +  V  K   A   G   I CVGET  +R+AG T++VV  Q        ++  N V+AYEPVWAIGTG   T    ++VH  +R  L      E  AA RI+YGGS
Sbjct:    9 IAGNWKMNGLKAQLAEFEAML-AGAPALADKADLLVCPPATLLHAFGQKLGNGARSFAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGE-GAAVRILYGGS 215          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 92/218 (42.20%), Postives = 113/218 (51.83%), Query Frame = 1
Query:   43 RKFFVGGNWKC----NGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   V GNWK     NG  E ++KI +    GQ                +L   +S L  G  VA  AQ+   +  GAFTGE++A ML        I+GHSERR    E +  V  K   AL  G+  I CVGETL QREAG T  VVA Q +A+ + +S     +IV+AYEPVWAIGTGK AT  QAQ VH  LR   +A     +A    I+YGGS
Sbjct:    4 RPKLVVGNWKLHGSLNGNAELLEKIKAA---GQTRAALAVCAPFP----YLAQCQSVLA-GSSVAWGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLR-GRVAACDAGVAQRMPILYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BART1 (Triosephosphate isomerase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 75/212 (35.38%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   52 FVGGNWKCNGTTEEVKKIVSVL-----NEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            F+ GNWK NGT E + ++ ++      N G                 +  L   SL  G     QNC     G +TG+ISA ML       VI+GHSERR +  E +  V  KV  A   GL  + C+GETLE+R+    M+V+A Q +      ++  N ++AYEPVWAIGTG  AT     +VH+ +R  + +    E     R++YGGS
Sbjct:    8 FLAGNWKMNGTRESLGELRAIATGVSSNSGHLFEALICVPATLLSRAYDTLNGESLLLG----GQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQENDAIVCAKVQAAWHAGLVALVCIGETLEERDNNKVMDVLAQQLEGSLPDDTTAENTIIAYEPVWAIGTGNTATSEDIAKVHYFIRDKICSRFGDE-GNKIRLLYGGS 214          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOBL6.008e-2737.85Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBK6.008e-2737.85Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_ACIBT6.008e-2737.33Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBS6.008e-2737.33Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBC6.008e-2737.33Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_SYMTH7.847e-2737.50Triosephosphate isomerase OS=Symbiobacterium therm... [more]
TPIS_BACSK7.847e-2737.74Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_RHOP51.025e-2637.32Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_RALSO1.025e-2642.20Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_BART11.025e-2635.38Triosephosphate isomerase OS=Bartonella tribocorum... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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