FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBY (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AYE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 83/218 (38.07%), Postives = 120/218 (55.05%), Query Frame = 1
Query:   52 FVGGNWKCN----GTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG---FHVAAQNCWVKKG-GAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK N       + +++   +L + Q                 L  V++ L+      H  AQ+     G GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIA-LTTVQAQLQDAARTVHTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB5 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB0057) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 83/218 (38.07%), Postives = 120/218 (55.05%), Query Frame = 1
Query:   52 FVGGNWKCN----GTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG---FHVAAQNCWVKKG-GAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +V GNWK N       + +++   +L + Q                 L  V++ L+      H  AQ+     G GA+TGE+SAE+L + +I  V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGS
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIA-LTTVQAQLQDAARTVHTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGS 223          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBP (Triosephosphate isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 81/221 (36.65%), Postives = 110/221 (49.77%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  L    V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGS
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVTAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGS 218          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 80/213 (37.56%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS---NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG   + K+++  L  G                      K          AQN    + GA+TGE+SA ML       VI+GHSER     E N  + +K A A   G+  I CVGETL++RE+G     +A Q  A+   VS  +     V+AYEPVWAIGT + ATP QA+  H  +R+  +A   P  A + RIIYGGS
Sbjct:    2 RRKLVVGNWKMNGNLAQNKRLLEALVRGLQDVEHVDIAVCVPYPYLFQAQKILSGTNIAWGAQNVAKHENGAYTGEVSAAMLKEFGASYVIVGHSERSDAYCESNANIAEKFAIAKHYGITPIFCVGETLQERESGVMEYAIANQLDAVLS-VSGGALLDQAVIAYEPVWAIGTNRTATPEQARAAHSFIRE-RIAAMHPGAAESVRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMS (Triosephosphate isomerase OS=Mycoplasma mycoides subsp. mycoides SC GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 76/212 (35.85%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            +K  + GNWK NGT E +   ++ ++                     GL    L     +AAQN   K  GA+TGEIS  ML  + +  VI+GHSERR + NE +  V  K    L   +  I C GETL+ +E+G T+E V  Q   + + +     I  ++AYEP+WAIGTGK AT + A+EV  ++R  L        A    I YGGS
Sbjct:    2 KKKVIFGNWKMNGTNESLTDFLNQVDNKIDSSKIIAGLAVPYVMLQTGL---KLAKNVKIAAQNVHYKDKGAYTGEISTTMLKEVGVEYVIIGHSERREMFNETDLDVNKKAKVLLENNITPIICCGETLQTKESGKTIEFVNNQINIMFEGIKKEDAIKAIIAYEPIWAIGTGKTATSSDAEEVCKQIRNNLSKIYDKNTAEQIIIQYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 78/213 (36.62%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L    VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGS
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGMIKE--------NFGKDTTVIYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 78/213 (36.62%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L    VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGS
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 78/213 (36.62%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L    VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGS
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 78/213 (36.62%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L    VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGS
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 82/214 (38.32%), Postives = 107/214 (50.00%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  + GNWK +    E   +V  L+                    LG + + L  G  VA  AQN   +  GA+TGEI+ +ML  L    VILGHSERR    E +  +  K   AL+ GLK I CVGE   +R++G    VV  Q +     +S+     +V+AYEPVWAIGTG  ATPA AQ +H  +R  L A +    A A  I YGGS
Sbjct:    2 RRPLLAGNWKMHYGVSEGVALVEALS-ADLTDLTDRDVLVCPPFTLLGSL-APLLDGTAVALGAQNMHYEAKGAYTGEIAPQMLKELGCSYVILGHSERRQYFGETDALINRKAHAALANGLKPIVCVGEVKAERDSGQAESVVVGQLRGSLAGLSAEQLRGVVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGS 213          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIBY1.025e-2638.07Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIB51.025e-2638.07Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_MYCBP1.338e-2636.65Triosephosphate isomerase OS=Mycobacterium bovis (... [more]
TPIS_METFK1.338e-2637.56Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_MYCMS1.748e-2635.85Triosephosphate isomerase OS=Mycoplasma mycoides s... [more]
TPIS_MYCH71.748e-2636.62Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHY2.283e-2636.62Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ2.283e-2636.62Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH22.283e-2636.62Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_HERA22.283e-2638.32Triosephosphate isomerase OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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