FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACJO (Triosephosphate isomerase OS=Lactobacillus johnsonii GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 73/208 (35.10%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK +   E+  + V+ +                       L K++     H  A+N + +  GAFTGE S ++L  + I   I+GHSERR   +E +E +  K     + G+  I C GE+LE REA    E V AQ KA  D +++   S +V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGS
Sbjct:    6 IAGNWKLHMNPEQTIEFVNAVKGKLPDPSKVESVIAAPAVDLYVLKKTAEGSNLHTGAENAYFEVEGAFTGETSPKVLNEMGIDYCIIGHSERRGYFHETDEDINKKAKALFANGVTPIICCGESLETREANKQDEWVVAQIKAALDGLTAEQVSKLVIAYEPIWAIGTGKTASADQAEEMCKTIRETVKDLYNEETAENVRIQYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BARHE (Triosephosphate isomerase OS=Bartonella henselae GN=tpiA PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 72/208 (34.62%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   52 FVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            F+ GNWK NGT E + ++ ++                      L      L      +  QNC     G +TG+ISA ML       VI+GHSERR +  E +  V  KV  A   GL  + CVGETLE+R++   ++V+  Q +      ++  NI++AYEPVWA+GTG  AT A   EVH  +   + +    E  A  R++YGGS
Sbjct:    8 FIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDE-GAKIRLLYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 77/208 (37.02%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG--FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            V GNWK NGT   + +I   + EG                  L  V ++L       + AQ+C  K+ GA TGE+SAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R+AG T++++  Q        ++  N V+AYEPVWAIGTG   T +  +E H  +R+ L++    E     RI+YGGS
Sbjct:    9 VAGNWKMNGTRASLDQI-KAMAEGVKGDLSARVDALICPPATLLYVATALCDDSPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 79/215 (36.74%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK + T  E +   + L   +                 L + K  L   + G+   AQ+    K GA+TGE+SA ML +L     I+GHSERR    E +  V +K    L +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP  A+ +H E+RK L        A+  RI+YGGS
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELK--RLLPPLQSEAAVLPAFPILPVAKEVLAETQVGY--GAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKALSERYGEAFASRVRILYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   61 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            GNWK NG++  +K++   ++E                  ++  V + L     V  QN      GA+TGE+SAEML ++    +++GHSERR +  E ++ V  K+   +   +  + C+GE+LE R+ G   +V+  Q   I + +S    + +++AYEPVWAIGTG VA+  Q QE H  +R  L+A     +A   +I+YGGS
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSV-YVKEVLAQLPKEIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGS 210          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORPE (Triosephosphate isomerase OS=Bordetella pertussis GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   V GNWK +G   E   +++ L                    +L    ++L+       AQ+      GA+TGE++A ML       V++GHSERR +  E ++ V DK   AL  GL  + CVGE+L++RE G+T+ V+  Q +  +A    +   +VLAYEPVWAIGTG+ A+P QAQEVH  +R  L    + ++    R++YGGS
Sbjct:    7 RARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVCVPFP--YLAQTAAALQGSAIGWGAQDVSAHAKGAYTGEVAAPMLAEFGCRWVLVGHSERRTLHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRDALVRMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORPA (Triosephosphate isomerase OS=Bordetella parapertussis GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   V GNWK +G   E   +++ L                    +L    ++L+       AQ+      GA+TGE++A ML       V++GHSERR +  E ++ V DK   AL  GL  + CVGE+L++RE G+T+ V+  Q +  +A    +   +VLAYEPVWAIGTG+ A+P QAQEVH  +R  L    + ++    R++YGGS
Sbjct:    7 RARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVCVPFP--YLAQTAAALQGSAIGWGAQDVSAHAKGAYTGEVAAPMLAEFGCRWVLVGHSERRTLHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRDALVRMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BORBR (Triosephosphate isomerase OS=Bordetella bronchiseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R   V GNWK +G   E   +++ L                    +L    ++L+       AQ+      GA+TGE++A ML       V++GHSERR +  E ++ V DK   AL  GL  + CVGE+L++RE G+T+ V+  Q +  +A    +   +VLAYEPVWAIGTG+ A+P QAQEVH  +R  L    + ++    R++YGGS
Sbjct:    7 RARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVCVPFP--YLAQTAAALQGSAIGWGAQDVSAHAKGAYTGEVAAPMLAEFGCRWVLVGHSERRTLHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRDALVRMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.086e-26
Identity = 76/212 (35.85%), Postives = 106/212 (50.00%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG---FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K  + GNWK N T  + K+  S  N+                     +  ++         +A QN    + GA+TGEISA+ML++L +   I+GHSERR    E +  V  K   A+   +  + CVGETLE+ EA  T +V+  Q K     V   S +++AYEP+WAIGTGK ATP QAQ+V   +RK    N +        I+YGGS
Sbjct:    3 KTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGS 205          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACGA (Triosephosphate isomerase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tpiA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.086e-26
Identity = 72/208 (34.62%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   55 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            + GNWK +   E+  + V+ +                       L K++     H  A+N + +  GAFTGE S ++L  + I   I+GHSERR   +E +E +  K     + G+  I C GE+LE REA    + V AQ KA  D +++   S +V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGS
Sbjct:    6 IAGNWKLHMNPEQTVEFVNAVKGKLPDPSKVESVIAAPAVDLYVLKKAAEGSDLHTGAENAYFEVEGAFTGETSPKVLNEMGIDYCIIGHSERRGYFHETDEDINKKAKALFANGVTPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVSKLVIAYEPIWAIGTGKTASADQAEEMCKTIRETVKDLYNEETAENVRIQYGGS 213          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LACJO2.982e-2635.10Triosephosphate isomerase OS=Lactobacillus johnson... [more]
TPIS_BARHE2.982e-2634.62Triosephosphate isomerase OS=Bartonella henselae G... [more]
TPIS1_RHIME2.982e-2637.02Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_THET23.894e-2636.74Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_FRAP23.894e-2633.50Triosephosphate isomerase OS=Francisella philomira... [more]
TPIS_BORPE3.894e-2635.85Triosephosphate isomerase OS=Bordetella pertussis ... [more]
TPIS_BORPA3.894e-2635.85Triosephosphate isomerase OS=Bordetella parapertus... [more]
TPIS_BORBR3.894e-2635.85Triosephosphate isomerase OS=Bordetella bronchisep... [more]
TPIS_MYCHR5.086e-2635.85Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_LACGA5.086e-2634.62Triosephosphate isomerase OS=Lactobacillus gasseri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
back to top