FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.620e-48
Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RKFFVGGN+K NGT + +  I++ LN  +                +L L +        V+AQN + K  GAFTGE+S E L + +I   + GHSERR++L E +EFV  K   A++ GL VI C+GE+LE+REAG T++VV  Q  A+A+ VS   W+ +V+AYEP+WAIGTGKVAT  QAQEVH  +RKWL    SPE A   R+IYGGS
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAI--YLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.796e-47
Identity = 101/212 (47.64%), Postives = 130/212 (61.32%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+FFVGGN+K NGT E V KIV  LN+ +                 L  V  + +    V+AQNC+ K  GA+TGEIS E + +L     + GHSERR I+ E ++F+  K  +AL QGL VI C+GETLE+R+A  T++V A Q  A+A  VS WS IV+AYEPVWAIGTG  ATP  AQE H  +R+ L  +   + A  TRI+YGGS
Sbjct:    1 MARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALA-VNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.064e-47
Identity = 99/214 (46.26%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXX--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R FFVGGN+K NGT   +K+IV  LN  +                   + LVK S      V AQN ++K  GAFTGE S + + ++    VILGHSERR    E ++ + +K A+ALSQG+ VI C+GETL+Q++AG+T++VV  Q +A+ D+V  WSN+V+AYEPVWAIGTG  ATP  AQE+H  +R++L      + A  TRI+YGGS
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKSQ---VSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.002e-47
Identity = 102/215 (47.44%), Postives = 124/215 (57.67%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RK FVGGNWK NG+   +      L +                  +L   +     G  +AA+NC+    GAFTGEIS EM+ +     VILGHSERR I  E NE +G+KV +AL  GL VI C+GE L +REAG T +V  AQ  AIA  V S   W  +V+AYEPVWAIGTGK ATPAQAQEVH  +R W+  +    IA   RI+YGGS
Sbjct:    1 MTRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPAC--YLKYAQDKAPKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.826e-47
Identity = 103/215 (47.91%), Postives = 132/215 (61.40%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTT-EEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R FFVGGNWK N T+    K +V  LN+                  +L  ++        VAAQN + K+ GAFTGEIS + + +  IP VILGHSERR + +E +E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+L    SP++A+ TR+IYGGS
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPAL--YLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.916e-47
Identity = 106/214 (49.53%), Postives = 126/214 (58.88%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RKFFVGGN+K NG  E    I+  LN                   +L   +        VAAQN + K  GAFTGEIS + L    I   ILGHSERR+IL E +EF+  K   A+  GL+VI C+GETLE+REA  T++VV  Q  A A  +S   W+ +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    S E A  TRIIYGGS
Sbjct:    1 MPRKFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPAL--YLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 95/214 (44.39%), Postives = 133/214 (62.15%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXX--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P   V AQN ++K  GAFTGE S + + ++    VILGHSERR   +E ++F+ DK  +AL QG+ VI C+GETLE+++AG T++VV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP  AQ++H  +RK+L +    + A+  RI+YGGS
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 95/212 (44.81%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R FF+GGN+K NGT   +K+IV  LN                       V  + +    VAAQN ++K  GAFTGE S E + ++    VILGHSERR   +E +EF+ DK  +AL  G+KVI C+GETLE+++ G T+EVV  Q +A+ D+V  W+N+V+AYEPVWAIGTG  AT   AQ +H  +R++L    S + A   RI+YGGS
Sbjct:    1 MARTFFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHA-VSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 96/213 (45.07%), Postives = 132/213 (61.97%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGL-VKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R+FFVGGN+K NGT +++  I+  LN+                  +LGL V+ + +P   + AQN + K  GAFTGE  A  ++++     + GHSERR I+ E +EF+ +K  +AL  G+KVI C+GETLE+R+ G T++V A Q  A++  VS WSNIV+AYEPVWAIGTG  ATP  A+E H  +R  L  +   E A  TRI+YGGS
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPAL--YLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.345e-45
Identity = 99/206 (48.06%), Postives = 128/206 (62.14%), Query Frame = 1
Query:   64 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            NWKCNG+   +  ++  LN                    + + K+ L  P F +AAQN  + + GAFTGE+S ++L +  I  V+LGHSERRL   E NE V +KVA A + G  VI CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QAQEVH  LR+W+ +    +IAA  RI+YGGS
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLH--IPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGS 214          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PARBA3.620e-4848.13Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_DEBHA1.796e-4747.64Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_ZYGBA3.064e-4746.26Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_TAESO4.002e-4747.44Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_COPC76.826e-4747.91Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_EMENI8.916e-4749.53Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_YEAST9.857e-4644.39Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_KLUMA1.287e-4544.81Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_CANAL2.196e-4545.07Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_TRYCR8.345e-4548.06Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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