FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.778e-40
Identity = 90/214 (42.06%), Postives = 126/214 (58.88%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+ VI CVGETL++R+A  TMEV  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS
Sbjct:    4 RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGS 216          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.239e-39
Identity = 95/215 (44.19%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  + GNWK NGTT+    + + + +G                  L  V+  +   G  + AQN  V   GAFTGEIS EML ++    VILGHSERR +  E NE V  KVA A   GL  I CVGETLEQREA  TM+V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R  L       +A A RI+YGGS
Sbjct:    2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGS 216          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 96/212 (45.28%), Postives = 117/212 (55.19%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K+ GA+TGE+SA M+ +     VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 96/212 (45.28%), Postives = 117/212 (55.19%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K+ GA+TGE+SA M+ +     VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 96/214 (44.86%), Postives = 115/214 (53.74%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKK----IVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T  E  +    I+  L E                    G++  +   G H+AAQNC  +  GAFTGE+S  ML       VI+GHSERR    + N  V  KV  ALS GL VI CVGETL++RE G T EVV  Q K   + V+   +IV+AYEPVWAIGTGK A+  QAQEVH  +R  +    S   AA  RI YGGS
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGT---GIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 95/212 (44.81%), Postives = 120/212 (56.60%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK N T  E  ++ + + E                   L  V  ++   G  +AAQNC  +  GAFTGE+S  ML       VILGHSERR +  E NE V  KV  AL++GL+VI CVGETL++REAG T ++V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGS
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.755e-37
Identity = 86/214 (40.19%), Postives = 127/214 (59.35%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M R   V GNWK NG     K +++ + +                  +L   +S++     + +QN   ++ GAFTGE+SA ML  +    VI+GHSERR +  E +  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++ LA   P+IA + R++YGGS
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF-LAKDDPDIAQSLRLLYGGS 209          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 97/216 (44.91%), Postives = 115/216 (53.24%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T  E      ++ + L EG                 F  L +     G  +A  AQNC  +  GAFTGE+SA M+       VI GHSERR    E N  V  KV +ALS+GL+VI C GETLEQRE G T +VV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGS
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEG------FTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 92/212 (43.40%), Postives = 115/212 (54.25%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K  GA+TGE+SAEM+ +     VILGHSERR    E    + +KV  AL+ GL  I C+GE LE+REA    EVVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 92/213 (43.19%), Postives = 123/213 (57.75%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKG-GAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NGT   V +++      Q                   ++         V AQ+C ++ G GA TGE+SA+ LV+L    V++GHSERRL+L E +E V  K A A + GLK + C+GETLE+REAG T+EVVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R   LA +   IA   R++YGGS
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFRR-QALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRD-QLARSDRRIAEGVRLLYGGS 212          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA2.778e-4042.06Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_MAGSM5.239e-3944.19Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_BACFR1.524e-3845.28Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN1.524e-3845.28Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_PROA29.880e-3844.86Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP81.290e-3744.81Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_ALCBS3.755e-3740.19Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_CHLPD1.092e-3644.91Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACTN1.427e-3643.40Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_PSEU52.434e-3643.19Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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