FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875456_ssr14 microsatellite FC875456_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:21..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 97/216 (44.91%), Postives = 117/216 (54.17%), Query Frame = 1
Query:   43 RKFFVGGNWKCN----GTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK FV GNWK N    G      +I+ +L +                     ++  S      +AAQNC+ +  GA+TGEISA ML N     VILGHSERR   NE +E V  KV  ALS  L VI CVGETLEQRE+G T  VV  Q +  + D       ++V+AYEPVWAIGTGK ATP QAQEVH  +R  +      E+A   RI YGGS
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDES---AIKLAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 91/212 (42.92%), Postives = 115/212 (54.25%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N   +E   +   LNE                   L  V   + +    V A+NC  K  GA+TGE+SAEM+ +     VILGHSERR   +E  E + +KV  AL+  LK I C+GE LE+REA    EVVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 88/213 (41.31%), Postives = 119/213 (55.87%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +     VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 88/213 (41.31%), Postives = 119/213 (55.87%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +     VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGS 214          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFL-GLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL--LANTSPEIAAATRIIYGGS 672
            RK  + GNWK N + +E   +   + E                   L G+ K        V AQN +     AFTGE S E L  L +  V++GHSERR  L E N F  +K+ + L     V+ CVGETL +RE+G T EV+++Q +     +   S+SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK +  L   + EIA +  I+YGGS
Sbjct:    2 RKTVIAGNWKMNLSEKEALSLAHSIKEKIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGS 216          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFL-GLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL--LANTSPEIAAATRIIYGGS 672
            RK  + GNWK N + +E   +   + E                   L G+ K        V AQN +     AFTGE S E L  L +  V++GHSERR  L E N F  +K+ + L     V+ CVGETL +RE+G T EV+++Q +     +   S+SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK +  L   + EIA +  I+YGGS
Sbjct:    2 RKTVIAGNWKMNLSEKEALSLAHSIKEKIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGS 216          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 92/216 (42.59%), Postives = 118/216 (54.63%), Query Frame = 1
Query:   34 KMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA---IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            K+ RK  + GNWK + T  E KK VS+L                       + +        + AQN + +  GAFTGEIS  ML  + +  VI+GHSERR I  E +EF+  KV   L +G+  I CVGETLE+RE G T  VV  Q +      D+  +   +V+AYEPVWAIGTG+VATP QAQEVH  +RK L      E A + RI+YGGS
Sbjct:  399 KITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEA-KRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGS 613          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.060e-35
Identity = 93/215 (43.26%), Postives = 123/215 (57.21%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSS-LRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK NG +  V ++++ +  G                 F+ + ++S +  G  V   AQN      GAFTGEISA ML        I+GHSERRL+  E NE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L+A  +PE+A A +IIYGGS
Sbjct:    2 RRPLVVGNWKMNGRSASVARLLNDILAG----IGDCKAEVGVCVPFVYIPQASEILKGTKVMLGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGS 211          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 92/214 (42.99%), Postives = 123/214 (57.48%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            R+  V GNWK +GT   V ++++ L                    ++  V   L+     V AQN  V+   GA TGEI+   LV+     V++GHSERRLI+ E +  +  K A A + GLK + CVGETLEQREAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGS
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 90/213 (42.25%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   43 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            RK  V GNWK N T  E   +   L+E                   L  V +++      VAA+NC  K+ GA+TGE+SA M+ +     VILGHSERR   +E  E +  KV  AL+ GL  I C+GE LE+REAG   EVV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGS 214          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLT32.434e-3644.91Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_BACV83.178e-3642.92Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_PORGI9.248e-3641.31Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG39.248e-3641.31Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_LEPBL1.577e-3542.33Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ1.577e-3542.33Triosephosphate isomerase OS=Leptospira borgpeters... [more]
PGKT_THEMA1.577e-3542.59Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_METCA2.060e-3543.26Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_PSEF52.691e-3542.99Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PARD87.829e-3542.25Triosephosphate isomerase OS=Parabacteroides dista... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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