FC875458

Overview
NameFC875458
Unique NameFC875458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:40..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2A_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Homo sapiens GN=CAMK2A PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +          Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     LI DL  GGELF+ I+A+ +YSE  A++  +Q++  V +CH MGV+HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   13 YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAI 161          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KPSH1_DANRE (Serine/threonine-protein kinase H1 homolog OS=Danio rerio GN=pskh1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  264 LGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            +GRG F     V H+ T+Q +A K I +R    R+  E    E+ ++  +  H NI++L   +E    V ++M+L  GGELFDRII +G ++ER A  + + ++  V Y H++G+ HRDLKPEN L+     DS +  TDFGL+
Sbjct:  102 IGRGSFSRVVRVEHRSTRQPYAIKMIETRYREGREVCES---ELCVLRRVR-HTNIIQLMEVFETAERVYMVMELATGGELFDRIITRGSFTERDATRVLQMVLDGVKYLHTLGITHRDLKPENLLYYHPGADSKIMITDFGLA 241          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC1_YEAST (Calcium/calmodulin-dependent protein kinase I OS=Saccharomyces cerevisiae GN=CMK1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  237 RNTYIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLI-NRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            +  Y+FG+ LG G FG+     +  T +  A K +  + L  N+  +E +  E+ I+  L  H NIV  K  +E +    +I  L  GGELFDRI+ KG ++E  A  +  ++++ V Y HS  ++HRDLKPEN L+   +++SPL   DFG++
Sbjct:   34 KKKYVFGKTLGAGTFGVVRQAKNTETGEDVAVKILIKKALKGNKVQLEALYDELDILQRLH-HPNIVAFKDWFESKDKFYIITQLAKGGELFDRILKKGKFTEEDAVRILVEILSAVKYMHSQNIVHRDLKPENLLYIDKSDESPLVVADFGIA 186          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: CIPKF_ORYSJ (CBL-interacting protein kinase 15 OS=Oryza sativa subsp. japonica GN=CIPK15 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            Y  GR LG+G FG  +   +  + Q  A K +  ++++     E +RRE+  M  L  H+NIV+L      R+ +  +M+   GGELF+++  +G  +E  A    +Q+++ V YCHS GV HRDLKPEN L     E+  LK +DFGLS
Sbjct:   12 YELGRLLGKGTFGKVHYARNLESNQSVAIKMMDKQQILKVGLSEQIRREITTMR-LVAHKNIVQLHEVMATRNKIYFVMEYVKGGELFEKVAKRGKLTEVVAHKYFQQLISAVDYCHSRGVYHRDLKPENLLLD---ENENLKVSDFGLS 157          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KPSH1_PINFU (Serine/threonine-protein kinase H1 homolog OS=Pinctada fucata GN=PSKH1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  264 LGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDV-RREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            +GRG F     V H+ TKQ +A K      +I+R   ++V   EV ++  +  H  I++L   +E +  V ++M+L  GGELFDRIIAKG ++ER A  +   ++  V Y H +G+ HRDLKPEN L+     DS +  TDFGLS
Sbjct:   86 IGRGNFSKVVRVEHRVTKQPYAIK------MIDRVQGKEVFESEVAVLRRVK-HSYIIQLIEVFETKDKVYMVMELATGGELFDRIIAKGSFTERDATRVLNMVLDGVKYLHGLGITHRDLKPENLLYYHPGHDSKIMITDFGLS 223          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: CIPKE_ORYSJ (CBL-interacting protein kinase 14 OS=Oryza sativa subsp. japonica GN=CIPK14 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            Y  GR LG+G FG  +   +  + Q  A K +  ++++     E +RRE+  M  L  H+NIV+L      R+ +  +M+   GGELF+++  +G  +E  A    +Q+++ V YCHS GV HRDLKPEN L     E+  LK +DFGLS
Sbjct:   12 YELGRLLGKGTFGKVHYARNLESNQSVAIKMMDKQQVLKVGLSEQIRREITTMR-LVAHKNIVQLHEVMATRNKIYFVMEYVKGGELFEKVAKRGKLTEVVAHKYFQQLISAVDYCHSRGVYHRDLKPENLLLD---ENENLKVSDFGLS 157          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KIN10_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = 3
Query:  225 MEDVRNTYIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLS 695
            +E +   Y  GR LG G FG   +  H  T  + A K ++ RK+ N +  E VRRE++I+  L  H +I+ L    E    + L+M+    GELFD I+ KG   E  A N  +Q+++ V YCH   V+HRDLKPEN L  S      +K  DFGLS
Sbjct:   35 VESILPNYKLGRTLGIGSFGRVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILR-LFMHPHIIRLYEVIETPTDIYLVMEYVNSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCN---VKIADFGLS 187          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KC2D2_DANRE (Calcium/calmodulin-dependent protein kinase type II delta 2 chain OS=Danio rerio GN=camk2d2 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        + Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  VH+CH  G++HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   13 YQLFEELGKGAFSVVRRCVKISSGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVHHCHVNGIVHRDLKPENLLLASKMKGAAVKLADFGLAI 161          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: CIPK5_ORYSJ (CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica GN=CIPK5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 61/154 (39.61%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  240 NTYIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSVF 701
            N Y  GR LG+G F   Y   +  + Q  A K I   K++    ++ ++RE+ IM  L  H NIV+L      +  +   M+   GGELF R+ A+G   E AA    +Q++  V +CHS GV HRDLKPEN L     E+  LK +DFGLS F
Sbjct:   10 NRYELGRMLGQGTFAKVYHARNLASNQSVAIKVIDKEKVLRVGMIDQIKREISIMR-LVRHPNIVQLHEVMASKSKIYFAMEYVRGGELFSRV-ARGRLKEDAARKYFQQLIGAVDFCHSRGVYHRDLKPENLLVD---ENGNLKVSDFGLSAF 158          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2D_CHICK (Calcium/calmodulin-dependent protein kinase type II delta chain OS=Gallus gallus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        T Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V++CH  G++HRDLKPEN L +S ++ + +K  DFGL++
Sbjct:   14 YQLFEELGKGAFSVVRRCMKITTGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 162          
The following BLAST results are available for this feature:
BLAST of FC875458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCC2A_HUMAN1.954e-2339.74Calcium/calmodulin-dependent protein kinase type I... [more]
KPSH1_DANRE2.552e-2338.89Serine/threonine-protein kinase H1 homolog OS=Dani... [more]
KCC1_YEAST3.334e-2336.36Calcium/calmodulin-dependent protein kinase I OS=S... [more]
CIPKF_ORYSJ3.334e-2338.00CBL-interacting protein kinase 15 OS=Oryza sativa ... [more]
KPSH1_PINFU4.354e-2340.69Serine/threonine-protein kinase H1 homolog OS=Pinc... [more]
CIPKE_ORYSJ4.354e-2338.00CBL-interacting protein kinase 14 OS=Oryza sativa ... [more]
KIN10_ARATH5.686e-2339.49SNF1-related protein kinase catalytic subunit alph... [more]
KC2D2_DANRE5.686e-2338.41Calcium/calmodulin-dependent protein kinase type I... [more]
CIPK5_ORYSJ7.427e-2339.61CBL-interacting protein kinase 5 OS=Oryza sativa s... [more]
KCC2D_CHICK9.699e-2338.41Calcium/calmodulin-dependent protein kinase type I... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404B09EF CTVClemen1 Citrus clementina cDNA clone C31404B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875458 ID=FC875458; Name=FC875458; organism=Citrus clementina; type=EST; length=706bp
GCATTTGTCTTCCCGGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAAC
TGTAACGGCCTACCCTCGTCTCAAACTCAACTCCACTCAACCACTGCCGA
TCCCGACACTGGGCCCGGCCACCACCCCAACGGCCTCAAAATAGATCCTC
CGGGTCCTCCTCGTCCTTCTTCCTCTGCCACGTCAGCCACCTCGTCATCC
GTTGGCCGTGTCCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACAT
CTTCGGCCGCGAGCTCGGCCGCGGCCAGTTCGGCATCACCTACTTAGTAA
CTCACAAATACACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGC
AAGCTCATAAACCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGAT
CATGCACCACCTAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGT
ATGAGGACAGGCACTCGGTGAATTTGATTATGGATTTGTGTGCGGGAGGG
GAGTTGTTTGATCGGATCATAGCCAAGGGGCATTATTCGGAGAGAGCCGC
TGCGAATTTGTGTCGACAGATGGTGACTGTGGTGCATTACTGTCATTCCA
TGGGTGTGATGCACAGAGACTTGAAGCCTGAGAATTTCTTATTCTCGAGT
TCCGCTGAAGATTCTCCTTTGAAGGCTACTGATTTCGGACTCTCTGTGTT
TTTCAG
back to top