FC875458

Overview
NameFC875458
Unique NameFC875458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:40..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2B_RAT (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Rattus norvegicus GN=Camk2b PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ++G+G F +        T  ++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V +CH MGV+HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   14 YQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDH-QKLEREARICR-LLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2B_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Mus musculus GN=Camk2b PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ++G+G F +        T  ++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V +CH MGV+HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   14 YQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDH-QKLEREARICR-LLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2B_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Homo sapiens GN=CAMK2B PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ++G+G F +        T  ++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V +CH MGV+HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   14 YQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDH-QKLEREARICR-LLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2B_BOVIN (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Bos taurus GN=CAMK2B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ++G+G F +        T  ++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V +CH MGV+HRDLKPEN L +S  + + +K  DFGL++
Sbjct:   14 YQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDH-QKLEREARICR-LLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAF7 (Calcium-dependent protein kinase 4 OS=Plasmodium falciparum (isolate 3D7) GN=CPK4 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  264 LGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLF-SSSAEDSPLKATDFGLSVFF 704
            LG+G FG   L   K+T  ++A K IS + +  + D E + REV+++  L  H NI++L   +ED +   L+ D+  GGELFD II++  + E  AA + +Q+++ + Y H   V+HRDLKPEN L  + + ED  +K  DFGLS  F
Sbjct:   76 LGKGSFGEVILSRDKHTGHEYAIKVISKKHVKRKTDKESLLREVELLKMLD-HINIMKLYEFFEDNNYYYLVSDVYTGGELFDEIISRKRFYEIDAARIIKQILSGITYMHKNNVVHRDLKPENILLETKNKEDMIIKIIDFGLSTHF 222          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: RAD53_YEAST (Serine/threonine-protein kinase RAD53 OS=Saccharomyces cerevisiae GN=RAD53 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  249 IFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSP--LKATDFGLS 695
            I    +G+G F        + T + FA K IS RK+I   +++ V RE++++  L  H  IV LKG YED  S  ++M+  +GG+L D + A G   E A   + RQ++T + Y HSMG+ HRDLKP+N L     +D P  +K TDFGL+
Sbjct:  199 IIDEVVGQGAFATVKKAIERTTGKTFAVKIISKRKVIG--NMDGVTRELEVLQKLN-HPRIVRLKGFYEDTESYYMVMEFVSGGDLMDFVAAHGAVGEDAGREISRQILTAIKYIHSMGISHRDLKPDNILIE---QDDPVLVKITDFGLA 343          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2D_RAT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Rattus norvegicus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        T Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V++CH  G++HRDLKPEN L +S ++ + +K  DFGL++
Sbjct:   14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2D_RABIT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Oryctolagus cuniculus GN=CAMK2D PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        T Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V++CH  G++HRDLKPEN L +S ++ + +K  DFGL++
Sbjct:   14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2D_PIG (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Sus scrofa GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        T Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V++CH  G++HRDLKPEN L +S ++ + +K  DFGL++
Sbjct:   14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 162          
BLAST of FC875458 vs. ExPASy Swiss-Prot
Match: KCC2D_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Mus musculus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  246 YIFGRELGRGQFGITYLVTHKYTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAKGHYSERAAANLCRQMVTVVHYCHSMGVMHRDLKPENFLFSSSAEDSPLKATDFGLSV 698
            Y    ELG+G F +        T Q++A K I+++KL  RD  + + RE +I   L  H NIV L  +  +     L+ DL  GGELF+ I+A+ +YSE  A++  +Q++  V++CH  G++HRDLKPEN L +S ++ + +K  DFGL++
Sbjct:   14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDH-QKLEREARICR-LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 162          
The following BLAST results are available for this feature:
BLAST of FC875458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCC2B_RAT9.699e-2337.75Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_MOUSE9.699e-2337.75Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_HUMAN9.699e-2337.75Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_BOVIN9.699e-2337.75Calcium/calmodulin-dependent protein kinase type I... [more]
CDPK4_PLAF79.699e-2339.86Calcium-dependent protein kinase 4 OS=Plasmodium f... [more]
RAD53_YEAST1.267e-2239.74Serine/threonine-protein kinase RAD53 OS=Saccharom... [more]
KCC2D_RAT1.267e-2238.41Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_RABIT1.267e-2238.41Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_PIG1.267e-2238.41Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_MOUSE1.267e-2238.41Calcium/calmodulin-dependent protein kinase type I... [more]

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Properties
Property NameValue
Genbank descriptionC31404B09EF CTVClemen1 Citrus clementina cDNA clone C31404B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875458 ID=FC875458; Name=FC875458; organism=Citrus clementina; type=EST; length=706bp
GCATTTGTCTTCCCGGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAAC
TGTAACGGCCTACCCTCGTCTCAAACTCAACTCCACTCAACCACTGCCGA
TCCCGACACTGGGCCCGGCCACCACCCCAACGGCCTCAAAATAGATCCTC
CGGGTCCTCCTCGTCCTTCTTCCTCTGCCACGTCAGCCACCTCGTCATCC
GTTGGCCGTGTCCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACAT
CTTCGGCCGCGAGCTCGGCCGCGGCCAGTTCGGCATCACCTACTTAGTAA
CTCACAAATACACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGC
AAGCTCATAAACCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGAT
CATGCACCACCTAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGT
ATGAGGACAGGCACTCGGTGAATTTGATTATGGATTTGTGTGCGGGAGGG
GAGTTGTTTGATCGGATCATAGCCAAGGGGCATTATTCGGAGAGAGCCGC
TGCGAATTTGTGTCGACAGATGGTGACTGTGGTGCATTACTGTCATTCCA
TGGGTGTGATGCACAGAGACTTGAAGCCTGAGAATTTCTTATTCTCGAGT
TCCGCTGAAGATTCTCCTTTGAAGGCTACTGATTTCGGACTCTCTGTGTT
TTTCAG
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