FC875464

Overview
NameFC875464
Unique NameFC875464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10822 contig Ccv1_Contig10822:100..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 73/172 (42.44%), Postives = 102/172 (59.30%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDY 612
            +  +  ++  A ++  R    ++++AVSKTKPV  I +  +AG R FGENYVQE V+K     +      LEWHFIG LQSNK + +     +   V ++D EKIA RL+     +   PL+VL+QVNTSGE SKSG+EP     L + +S+  PNL   GLM+I   +PDY
Sbjct:    8 IEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDY 174          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 73/169 (43.20%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 609
            L ++I+ V  A   +S+   R R+VAVSKTK   +I   Y    R FGENYVQE+ EK+  L     D+ WHFIG +QSNK+  +    P L  VE+V+ EK A   ++     G    PL+VLVQVNTSGE++K G+E     +L + + + C NL+F G MTIG  D
Sbjct:   10 LFNIIEAVADAVT-ASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKI-CNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFD 176          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 69/174 (39.66%), Postives = 102/174 (58.62%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEKLQ 636
            L  V++R+ +A ER+ R  +  +++  SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D + +A  + +           VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE ++
Sbjct:    7 LSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRA-FKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVR 173          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  178 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEESKSGV-EPSGCLELVK-HVSQNCPNLEFCGLMTIG 600
            +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D+ K A +LN  R        P+   VQ+NTS E+ KSG+   +   E++   +S+ C  ++  GLMTIG
Sbjct:   41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIG 184          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 609
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 609
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 609
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  124 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG 600
            ++I ++ +A    SR    ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG
Sbjct:   10 ALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIG 165          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 66/174 (37.93%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  181 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPEKLQTXSKCRSEVCKALGIQKSM 693
            ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   +   T  K   ++  A  +   M
Sbjct:   28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNASVLSMGM 198          
BLAST of FC875464 vs. ExPASy Swiss-Prot
Match: Y531_BUCAP (UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_531 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  118 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLM 591
            ++ + +++    ++++ P  +I+I+AVSK + +  I+    +G   FGENYVQE ++K  +L    ++ WHFIG +QSNK K +     N    +++D EKIA  LN+  E     P+ VL+Q+N S E +K+G+      +L K +S   PNL F G+M
Sbjct:    8 IKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKS-FPMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIM 162          
The following BLAST results are available for this feature:
BLAST of FC875464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y461_VIBCH2.962e-2742.44UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
PROSC_CAEEL2.507e-2643.20Proline synthetase co-transcribed bacterial homolo... [more]
Y274_AQUAE3.275e-2639.66UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
YBD6_YEAST2.123e-2547.59UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
YGGS_ECOLI1.521e-2341.67UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL61.521e-2341.67UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO571.521e-2341.67UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
Y395_HELPY4.893e-2240.00UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
Y395_HELPJ1.090e-2137.93UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
Y531_BUCAP3.282e-1835.00UPF0001 protein BUsg_531 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionC31404C03EF CTVClemen1 Citrus clementina cDNA clone C31404C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875464 ID=FC875464; Name=FC875464; organism=Citrus clementina; type=EST; length=709bp
ATGAAGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATAT
CAACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATG
GCGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCC
GCCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAG
CAAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACC
GATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAG
CTTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAA
AGTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTG
TGGACAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATG
GGAAGGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGA
ATCGAAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATG
TTAGTCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGG
ATGCCAGATTACACATCGACCCCGGAGAAACTTCAGACATTNAGCAAATG
CAGAAGTGAGGTATGCAAGGCTCTTGGAATACAGAAGAGCATGTGATCTG
TCTATGGGA
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