FC875469

Overview
NameFC875469
Unique NameFC875469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10234 contig Ccv1_Contig10234:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_YARLI (Protein transport protein SEC22 OS=Yarrowia lipolytica GN=SEC22 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 82/194 (42.27%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQAL 723
            MV  T+I R +DGLPL+  +DDG++  +    K+Q K + + LS   N A R SIE+G YV HY+++  + Y  + + +YP+KLAF YL++L  EF++ +G + ++   RPY F++FDTF+QKTK++YQDTR   N+ KLN EL +V ++MT+N++++L  G  LD +S++SS L +ES+ Y    + +N +A+
Sbjct:    1 MVLSTLIMRASDGLPLSASVDDGQE--NLSEQKKQCKLVTQKLSA--NSADRASIESGNYVIHYLMKDGIVYYCISESSYPRKLAFSYLDELDREFQKSHGQEALKEGVRPYKFVEFDTFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSSNLRTESKKYRRAAQRINWEAM 190          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.537e-37
Identity = 76/181 (41.99%), Postives = 119/181 (65.75%), Query Frame = 1
Query:  184 LPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQAL 723
            LPLA  +DD    R+ E +K+Q K + K LS       R SIE+G Y FHY+I+  +CYL +C+++YP+KLAF YLE+L  EF    G + ++   RPYAF++FDTF+QK+K++Y   R   N+ KLN EL +V ++MT+N++++L  G+ L++++++SS L   S  Y    + +N +AL
Sbjct:    7 LPLAASVDDESTERNLESHKKQAKLILKRLS--PTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEAL 185          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_ASHGO (Protein transport protein SEC22 OS=Ashbya gossypii GN=SEC22 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.969e-34
Identity = 75/190 (39.47%), Postives = 121/190 (63.68%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLN 711
            M+K T+I R  DGLPL   +DD  D   A+  K++VK L    +     A+  ++E+G Y  HY+ +  V Y+ + +R YP+ LAF YL ++++EFE   G + ++ + RPYAF+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S++S+ L  +S+ Y    + +N
Sbjct:    1 MIKSTLIFR-DDGLPLCSSVDDDTDPSLADQ-KKKVKVLISRFT--PQSANEATLESGAYEMHYVRQQSVVYIVIVERGYPRNLAFAYLANVRHEFEHSYGNEYVKPSVRPYAFVSFDNFLQKTKKIYNDKRVQGNLDQLNSDLLGVKQIMTKNIEDLLYRGDSLDRMSDLSASLRQDSKKYRRSAQKIN 186          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_KLULA (Protein transport protein SEC22 OS=Kluyveromyces lactis GN=SEC22 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.335e-33
Identity = 75/190 (39.47%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETA-ARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLN 711
            M++ T+I R  DGLPL   +DD  D    E  K++VK L    +     A+  ++E+G +  HYI    V Y+ + +R YP+ LAF YL D++ EFE   G Q+  +  RPY F+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S+MS+ L  +++ Y    + +N
Sbjct:    1 MIRSTLIFR-EDGLPLCASVDDDTDPSLQEQ-KKKVKILISRFT--PTSANEATVESGDFEIHYIRLNTVVYIVVAERNYPRNLAFSYLADIQQEFEHSYGGQLSKSNVRPYEFVSFDNFLQKTKKVYNDKRVQGNMDQLNQDLKGVKQIMTKNIEDLLYRGDSLDKMSDMSASLRQDAKKYRASAQKIN 186          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_YEAST (Protein transport protein SEC22 OS=Saccharomyces cerevisiae GN=SEC22 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 73/190 (38.42%), Postives = 111/190 (58.42%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLN 711
            M+K T+I R  DGLPL   +D+  D    E  KQ+VK +   L+     A+  ++E+G +  HY+ +  V Y  +C+  YP+ LAF YL D+  EFE     +  +   RPY F+ FD F+Q TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ LD++S+MSS L   S+ Y    + +N
Sbjct:    1 MIKSTLIYR-EDGLPLCTSVDNENDPSLFEQ-KQKVKIVVSRLT--PQSATEATLESGSFEIHYLKKSMVYYFVICESGYPRNLAFSYLNDIAQEFEHSFANEYPKPTVRPYQFVNFDNFLQMTKKSYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSSSLKETSKRYRKSAQKIN 186          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_CANGA (Protein transport protein SEC22 OS=Candida glabrata GN=SEC22 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLN 711
            M+K T++ R  DGLPL   +DD  D+ D  + +Q+ +            A+  ++E+     HYI +  V Y  +C+  YP+ LAF YL D+  EF+     ++ +   RPYAF  FDTF+Q+TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ L+++ +MS+ L   S+ Y    + +N
Sbjct:    1 MIKSTVVYR-DDGLPLCSSVDD--DISDLSLNEQKKRIKMVVSRMTPQSANEATLESKDSEIHYIRQQGVIYFVICEAGYPRNLAFSYLNDVAVEFQHSYSNELSKPTIRPYAFASFDTFLQRTKKAYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLEKMDDMSNSLKISSKKYRKSAQKIN 187          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22A_MOUSE (Vesicle-trafficking protein SEC22a OS=Mus musculus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQFPDRCTLKTGRYNINFISSLGVSYMMLCSENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22A_HUMAN (Vesicle-trafficking protein SEC22a OS=Homo sapiens GN=SEC22A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22A_MACFA (Vesicle-trafficking protein SEC22a OS=Macaca fascicularis GN=SEC22A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTDNYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22A_RAT (Vesicle-trafficking protein SEC22a OS=Rattus norvegicus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG +  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVVRVRDGLPLSASTDC-----EQSAGVQECRKYFKMLSRKLAQFPDRCTLKTGRHNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
The following BLAST results are available for this feature:
BLAST of FC875469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_YARLI2.402e-4042.27Protein transport protein SEC22 OS=Yarrowia lipoly... [more]
SEC22_SCHPO5.537e-3741.99Protein transport protein sec22 OS=Schizosaccharom... [more]
SEC22_ASHGO1.969e-3439.47Protein transport protein SEC22 OS=Ashbya gossypii... [more]
SEC22_KLULA6.335e-3339.47Protein transport protein SEC22 OS=Kluyveromyces l... [more]
SEC22_YEAST1.011e-3038.42Protein transport protein SEC22 OS=Saccharomyces c... [more]
SEC22_CANGA2.109e-2835.26Protein transport protein SEC22 OS=Candida glabrat... [more]
SC22A_MOUSE1.418e-1635.14Vesicle-trafficking protein SEC22a OS=Mus musculus... [more]
SC22A_HUMAN2.419e-1635.14Vesicle-trafficking protein SEC22a OS=Homo sapiens... [more]
SC22A_MACFA4.125e-1635.14Vesicle-trafficking protein SEC22a OS=Macaca fasci... [more]
SC22A_RAT9.190e-1634.46Vesicle-trafficking protein SEC22a OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC31404C08EF CTVClemen1 Citrus clementina cDNA clone C31404C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875469 ID=FC875469; Name=FC875469; organism=Citrus clementina; type=EST; length=723bp
AATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGGCA
AAGATTTGAATCGACAGGCTTTA
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