FC875469

Overview
NameFC875469
Unique NameFC875469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10234 contig Ccv1_Contig10234:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  265 KNLSRGQNEASRMSIETGPYVFH-YIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNG-AQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLN 711
            K ++   N   R  +E   YVFH Y     +C +   D+ YP ++A+  L  + +EF   N   + E+ A   +F + DT++ K    YQD +    I ++  EL E   ++ + ++ VL  GEKLD + + S  L+++SR++    K  N
Sbjct:   45 KTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVTLSFPELDTYLSK----YQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQN 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 40/149 (26.85%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + +++    +A+   ++ E+  IM RN+  V   GEKL+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 38/149 (25.50%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + ++   + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 38/149 (25.50%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + ++   + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 38/149 (25.50%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 38/149 (25.50%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 38/149 (25.50%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNR 714
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +    ++L R
Sbjct:   33 LAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
The following BLAST results are available for this feature:
BLAST of FC875469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YKT6_SCHPO1.242e-1229.14Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
VAMP7_CHICK1.622e-1226.85Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_MOUSE2.343e-1125.50Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_RAT3.996e-1125.50Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN3.996e-1125.50Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.996e-1125.50Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB5.219e-1125.50Vesicle-associated membrane protein 7 OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionC31404C08EF CTVClemen1 Citrus clementina cDNA clone C31404C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875469 ID=FC875469; Name=FC875469; organism=Citrus clementina; type=EST; length=723bp
AATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGGCA
AAGATTTGAATCGACAGGCTTTA
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