FC875473

Overview
NameFC875473
Unique NameFC875473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14251 contig Ccv1_Contig14251:2..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 83/153 (54.25%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 678
            L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LKQPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS+ A  +S+ SN Y+GK+ S+FLG  F IYD++P +N
Sbjct:   60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYN 212          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.611e-43
Identity = 84/151 (55.63%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPP 672
            L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITFP  LKQPGPRE P QC +RR++ TST+ LYL L+PS   E  K LLAAR+ RR   + ++ISL + D S  S+ YVGKL  +FLG  FTI+DS+PP
Sbjct:   71 LPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPP 221          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.505e-42
Identity = 79/153 (51.63%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 678
            L PELL ++++R+E  + +WP R++VVACA VC  WR++ KDIV++P   GK+TFP  LKQPGPR+   QC I+R+K   T++LYL L+ +   E GKFLL+A+R RR  H++YIIS+D+ ++S+ S+ Y+GKL S+FLG  F IYD++PP+N
Sbjct:   59 LPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYN 211          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.505e-42
Identity = 81/153 (52.94%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 678
            L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LKQPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR   +EYIIS+DA ++S+ SN+Y+GKL S+FLG  F +YD++PP N
Sbjct:   62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPN 214          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.272e-42
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPP 672
            L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR   +E+++SL   D S+ S+ Y+GKL S+FLG  FT+Y+++PP
Sbjct:   72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPP 222          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.274e-42
Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPSAAG 702
            L PELL +II R+E +E +WP R++VVACA VC+ WRE+ K+IVK+P L GKITFP  L+QPGPR+   QC IRR+K T T+YLYL+L +    + GKFLL+A+R      +EY+IS++A +LS+ +N  +GKL S+FLG  F IYD+  P+N    S +G
Sbjct:   56 LPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLGTKFVIYDTHTPYNATSDSQSG 216          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.290e-42
Identity = 97/229 (42.36%), Postives = 130/229 (56.77%), Query Frame = 1
Query:   28 RSGWAKMSLRN---SCLSRRISRSFGEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPSAAG 702
            R G+  +S R      +  R  RS    H+        AA D V SS  +                  L PELL ++I R+E +E +WP R+NVVACA VC+ WR++ ++IVK+P   GKITFP  LKQPGPR    QC I+R+K T T+ LYL L+ +   E GKFLL+A+RY R   +EY I + A + S+ SN Y+GKL S+ LG  F IYD++PP N    S +G
Sbjct:   11 RDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWA-----------------NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSG 222          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.243e-41
Identity = 78/149 (52.35%), Postives = 113/149 (75.84%), Query Frame = 1
Query:  235 LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 678
            LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LKQPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  ++EY+IS+DA ++S+ S+ Y+GKL S+FLG  F +YD+ P +N
Sbjct:   62 LLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYN 210          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 91/219 (41.55%), Postives = 130/219 (59.36%), Query Frame = 1
Query:   28 RSGWAKMSLRNSCLSRRISRSFGEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 681
            R G+  +S R+  ++          HK   ++ L+  DDS      S                  L PELL E+IRR+E  E +WP R+NVV  A VC+ WRE+ K+ V SP   GK+TFP  +KQPGPR+   QC I+RN+  ST++LYL L+    +E GKF+LAA+R+R+   +EY IS+ +G++S+ S   +GKL S+FLG  F IYD++PP+NG
Sbjct:   11 RDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESR--------------WASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNG 215          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.053e-40
Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSR 666
            L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LKQPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL A + S+ S+ YVGKL S FLG  FTIYD++
Sbjct:   51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQ 198          
The following BLAST results are available for this feature:
BLAST of FC875473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP1_ARATH5.963e-4454.25Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP5_ORYSJ8.611e-4355.63Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP7_ORYSJ2.505e-4251.63Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP10_ARATH2.505e-4252.94Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP6_ARATH3.272e-4252.98Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP13_ORYSJ4.274e-4252.17Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP14_ORYSJ7.290e-4242.36Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP5_ARATH1.243e-4152.35Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP3_ORYSJ8.060e-4141.55Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH1.053e-4056.76Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404C12EF CTVClemen1 Citrus clementina cDNA clone C31404C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875473 ID=FC875473; Name=FC875473; organism=Citrus clementina; type=EST; length=716bp
GAGGGAATCAAAGCCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGTC
TCTGAGAAATTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAGG
CACACAAATCTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGTC
GTGTCGTCGACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCCA
CTCCTCCGGGTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATCA
TAAGGCGCGTGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGTT
GTCGCTTGTGCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATAT
CGTCAAGTCTCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTTA
AACAGCCGGGTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAAT
AAGAAGACCTCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTAG
CGAAAAGGGGAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCAC
ACAGTGAGTATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAGT
AATGCATATGTTGGCAAATTAAGTTCTGATTTCCTTGGGGACAACTTTAC
AATTTACGACAGTCGGCCGCCTCACAATGGGTGCAAACCCTCAGCAGCAG
GGGTAGTCGACGATTT
back to top