FC875473

Overview
NameFC875473
Unique NameFC875473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.744e-38
Identity = 77/144 (53.47%), Postives = 105/144 (72.92%), Query Frame = 1
Query:  232 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYD 660
            ELL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  LKQ GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +R   ++YIISL + D+S+ SNAY+G++ S+FLG  FT++D
Sbjct:   39 ELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFD 182          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 73/144 (50.69%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  232 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYD 660
            ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQPGPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +    ++YIISL + D+S+ S AYVGK+ S+FLG  FT++D
Sbjct:   45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFD 188          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  229 PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYL 480
            PELL +++ R+E +ED+WP R+NVV+C  VCK WR+I K+IV  P +S K TFP  LKQPGP     QC ++RN+   TFYLYL
Sbjct:    3 PELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYL 86          
The following BLAST results are available for this feature:
BLAST of FC875473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP9_ARATH3.744e-3853.47Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH2.511e-3450.69Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP4_ARATH6.416e-2254.76Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC31404C12EF CTVClemen1 Citrus clementina cDNA clone C31404C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875473 ID=FC875473; Name=FC875473; organism=Citrus clementina; type=EST; length=716bp
GAGGGAATCAAAGCCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGTC
TCTGAGAAATTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAGG
CACACAAATCTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGTC
GTGTCGTCGACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCCA
CTCCTCCGGGTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATCA
TAAGGCGCGTGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGTT
GTCGCTTGTGCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATAT
CGTCAAGTCTCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTTA
AACAGCCGGGTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAAT
AAGAAGACCTCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTAG
CGAAAAGGGGAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCAC
ACAGTGAGTATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAGT
AATGCATATGTTGGCAAATTAAGTTCTGATTTCCTTGGGGACAACTTTAC
AATTTACGACAGTCGGCCGCCTCACAATGGGTGCAAACCCTCAGCAGCAG
GGGTAGTCGACGATTT
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