FC875474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 5.369e-42 Identity = 62/128 (48.44%), Postives = 75/128 (58.59%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 + ++ F AQT HETTGGW AP G Y+WGYCF E + +P YC +PC KYYGRGPIQ+T+NYNY A+D +SFK+A WFWMT Q PKPSCH VIT + P Sbjct: 128 KREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTP 253 HSP 2 Score: 70.0922 bits (170), Expect = 5.369e-42 Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1 Query: 118 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354 C G CG T + GG + IIS +F+ +L +RND C A+GFYTYDAF+ AA A+P F +G+ RE+AAF Sbjct: 57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAF 134
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 6.289e-40 Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 + ++ F AQT HETTGGW AP G YAWGYCF E + YC + +PC KYYGRGPIQL++N+NY A+D +SF +A WFWMT Q PKPSCH V T + P Sbjct: 134 KREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTP 260 HSP 2 Score: 70.4774 bits (171), Expect = 6.289e-40 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAF 354 G+ G + I+SR +F+ +L +RND CPA FYTYDAF+ AA AFP F +G + RE+AAF Sbjct: 75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAF 140
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.313e-40 Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 ++++ FF QT HET GG G + GYCF+ +I +YYGRGPIQLT NY R ATDP++SFK+AIWFWMT Q KPSCH VI + P Sbjct: 79 KKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTP 186 HSP 2 Score: 86.2705 bits (212), Expect = 6.313e-40 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357 GT G I++RE+FE +L +RN+ CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF Sbjct: 21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFF 86
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.313e-40 Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 ++++ FF QT HET GG G + GYCF+ +I +YYGRGPIQLT NY R ATDP++SF++AIWFWMTAQ KPSCH VI + P Sbjct: 79 KKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTP 186 HSP 2 Score: 86.2705 bits (212), Expect = 6.313e-40 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357 GT G I++RE+FE +L +RN+ CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF Sbjct: 21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 86
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.391e-39 Identity = 58/128 (45.31%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEMEP 703 + +L FFAQT ET+G + WGYC ++E++P S YC+ +YPC YYGRGP+QL WNYNY C ATDPVLSF++A+WFWM PSCHEVIT E P Sbjct: 115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSP 240 HSP 2 Score: 67.3958 bits (163), Expect = 1.391e-39 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 Query: 193 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357 + MFE +LP RN+ CP +GFYTYDA+ A + +P FG +G++ R RE+AAFF Sbjct: 68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.629e-37 Identity = 55/128 (42.97%), Postives = 75/128 (58.59%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 + ++ F AQ HETTGGW AP G YAWG C+ EI+P S YC+ +PC GK Y+GRGPIQ++WN+NY +D ++F++A+WFWMT + KPSCH+V+ E P Sbjct: 101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226 HSP 2 Score: 62.7734 bits (151), Expect = 1.629e-37 Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 154 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354 G+ + I+S +++ L +++D CPARGFYTY +F+ AA FP F +G R RE+AAF Sbjct: 41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.128e-37 Identity = 53/123 (43.09%), Postives = 65/123 (52.85%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 ++++ FF QT HETTGG A G +A GYCF+ E + +YGRGPIQLT NY ATD +SFK+AIWFWMTAQ KPSCH+VIT + P Sbjct: 71 KKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMG----------SGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTP 180 HSP 2 Score: 83.9593 bits (206), Expect = 6.128e-37 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357 G+ ++G I++ ++F ++L RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF Sbjct: 13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 78
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.992e-36 Identity = 57/128 (44.53%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 332 VQEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 ++ +L FF QT HETTGG R + ++ WGYCF EI SPP YYGRGPIQLT NY +TD V+SFK+AIWFWMTAQ KPSCH+VI P Sbjct: 84 IRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLV--STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTP 195 HSP 2 Score: 74.3294 bits (181), Expect = 2.992e-36 Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFF 357 C + + +G G +G +I++ +F +LP R++ +CPARGFYTYDAFI AA +FPAFG SG + RE+AAFF Sbjct: 14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.482e-35 Identity = 54/123 (43.90%), Postives = 64/123 (52.03%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 ++++ FF QT HETTGG +P G YA GYCF+ E + YYGRGPIQLT NY ATD +SFK+AIWFWMT Q KPSCH+VIT P Sbjct: 78 KKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMG----------NGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTP 187 HSP 2 Score: 76.6406 bits (187), Expect = 2.482e-35 Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357 GT +G I++ ++F+ +L RND RC A FYTYDAFI AA +FP FG +G++T R +EIAAFF Sbjct: 20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 1.574e-34 Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354 G G G G G G L II MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF Sbjct: 66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 143 HSP 2 Score: 78.5666 bits (192), Expect = 1.574e-34 Identity = 42/123 (34.15%), Postives = 52/123 (42.28%), Query Frame = 2 Query: 335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703 + ++ F QT HET G W A G +Y WGYC + NYNY C TDP ++FK+A+WFWMT Q PKPSCH VIT+ P Sbjct: 137 KREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTP 227 The following BLAST results are available for this feature:
BLAST of FC875474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875474 ID=FC875474; Name=FC875474; organism=Citrus clementina; type=EST; length=704bpback to top |