FC875474

Overview
NameFC875474
Unique NameFC875474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.369e-42
Identity = 62/128 (48.44%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            + ++  F AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT +  P
Sbjct:  128 KREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTP 253          

HSP 2 Score: 70.0922 bits (170), Expect = 5.369e-42
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAF 134          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.289e-40
Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            + ++  F AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q PKPSCH V T +  P
Sbjct:  134 KREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTP 260          

HSP 2 Score: 70.4774 bits (171), Expect = 6.289e-40
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAF 354
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAF 140          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.313e-40
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q  KPSCH VI  +  P
Sbjct:   79 KKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTP 186          

HSP 2 Score: 86.2705 bits (212), Expect = 6.313e-40
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFF 86          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.313e-40
Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +  P
Sbjct:   79 KKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTP 186          

HSP 2 Score: 86.2705 bits (212), Expect = 6.313e-40
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 86          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.391e-39
Identity = 58/128 (45.31%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEMEP 703
            + +L  FFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT E  P
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSP 240          

HSP 2 Score: 67.3958 bits (163), Expect = 1.391e-39
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  193 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFF
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.629e-37
Identity = 55/128 (42.97%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            + ++  F AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E  P
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          

HSP 2 Score: 62.7734 bits (151), Expect = 1.629e-37
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query:  154 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.128e-37
Identity = 53/123 (43.09%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HETTGG   A G  +A GYCF+ E +               +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +  P
Sbjct:   71 KKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMG----------SGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTP 180          

HSP 2 Score: 83.9593 bits (206), Expect = 6.128e-37
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 78          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.992e-36
Identity = 57/128 (44.53%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  332 VQEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++ +L  FF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ  KPSCH+VI     P
Sbjct:   84 IRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLV--STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTP 195          

HSP 2 Score: 74.3294 bits (181), Expect = 2.992e-36
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFF 357
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.482e-35
Identity = 54/123 (43.90%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HETTGG   +P G YA GYCF+ E +               YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q  KPSCH+VIT    P
Sbjct:   78 KKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMG----------NGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTP 187          

HSP 2 Score: 76.6406 bits (187), Expect = 2.482e-35
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.574e-34
Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 143          

HSP 2 Score: 78.5666 bits (192), Expect = 1.574e-34
Identity = 42/123 (34.15%), Postives = 52/123 (42.28%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            + ++  F  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q PKPSCH VIT+   P
Sbjct:  137 KREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTP 227          
The following BLAST results are available for this feature:
BLAST of FC875474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_ORYSJ5.369e-4248.44Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ6.289e-4045.74Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC6.313e-4041.46Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI6.313e-4041.46Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR1.391e-3945.31Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI10_ORYSJ1.629e-3742.97Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC6.128e-3743.09Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ2.992e-3644.53Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY2.482e-3543.90Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR1.574e-3457.69Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC31404D01EF CTVClemen1 Citrus clementina cDNA clone C31404D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875474 ID=FC875474; Name=FC875474; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTATTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAAATGGAA
CCAT
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