FC875474

Overview
NameFC875474
Unique NameFC875474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.544e-34
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  178 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFF 86          

HSP 2 Score: 82.0333 bits (201), Expect = 4.544e-34
Identity = 48/123 (39.02%), Postives = 60/123 (48.78%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI     P
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTP 186          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.308e-33
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  178 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFF 86          

HSP 2 Score: 82.0333 bits (201), Expect = 1.308e-33
Identity = 48/123 (39.02%), Postives = 60/123 (48.78%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            ++++  FF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI     P
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTP 186          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-31
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEMEP 703
            + ++  F AQT H T+GG        Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +  P
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          

HSP 2 Score: 72.4034 bits (176), Expect = 1.511e-31
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  109 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-31
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEMEP 703
            + ++  F AQT H T+GG        Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +  P
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          

HSP 2 Score: 72.4034 bits (176), Expect = 1.511e-31
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  109 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.044e-23
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  374 ETTGGWRDAPGGEYAWGYCFISEIS-PPSPYC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVI 685
            + T G R      +AWG C I+  +   + +C + ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++
Sbjct:  192 QATSGERSDVENPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIV 297          

HSP 2 Score: 59.3066 bits (142), Expect = 2.044e-23
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  151 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAF 354
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAF 186          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.261e-20
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YCN---LNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFW 643
            + ++  FFA   HET               +C+I EI  PS  YC+     +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          

HSP 2 Score: 58.9214 bits (141), Expect = 3.261e-20
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFF
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.170e-20
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 646
            + ++  FFA   HET               +C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          

HSP 2 Score: 48.1358 bits (113), Expect = 7.170e-20
Identity = 26/79 (32.91%), Postives = 36/79 (45.57%), Query Frame = 1
Query:  121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFF
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.579e-19
Identity = 38/111 (34.23%), Postives = 55/111 (49.55%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTA 652
            + ++  FFA   HET               +C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM +
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          

HSP 2 Score: 48.9062 bits (115), Expect = 1.579e-19
Identity = 26/85 (30.59%), Postives = 38/85 (44.71%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFF
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.233e-18
Identity = 39/108 (36.11%), Postives = 50/108 (46.30%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPYCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMT 649
            + ++  FFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT
Sbjct:  136 KREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          

HSP 2 Score: 47.7506 bits (112), Expect = 6.233e-18
Identity = 32/92 (34.78%), Postives = 42/92 (45.65%), Query Frame = 1
Query:  115 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFF
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 8.122e-18
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  425 YCFISEISPPS-PYCNLN---YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            +C+I EI+  S  YC+ N   YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +  P
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          

HSP 2 Score: 47.7506 bits (112), Expect = 8.122e-18
Identity = 30/84 (35.71%), Postives = 41/84 (48.81%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  F
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          
The following BLAST results are available for this feature:
BLAST of FC875474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_TOBAC4.544e-3460.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC1.308e-3358.33Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ1.511e-3137.50Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.511e-3137.50Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
AGI_URTDI2.044e-2335.19Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ3.261e-2033.94Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE7.170e-2035.78Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE1.579e-1934.23Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU6.233e-1836.11Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_BRANA8.122e-1840.00Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC31404D01EF CTVClemen1 Citrus clementina cDNA clone C31404D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875474 ID=FC875474; Name=FC875474; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTATTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAAATGGAA
CCAT
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