FC875474

Overview
NameFC875474
Unique NameFC875474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 49/138 (35.51%), Postives = 61/138 (44.20%), Query Frame = 2
Query:  290 KLFQPLVTLEMKPCVQEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEMEP 703
            K F    T       + ++  F AQT HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT    P
Sbjct:   30 KSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSP 146          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 5.418e-16
Identity = 33/104 (31.73%), Postives = 50/104 (48.08%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 646
            + ++  +FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+
Sbjct:   97 KREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPNK----EYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          

HSP 2 Score: 48.521 bits (114), Expect = 5.418e-16
Identity = 29/81 (35.80%), Postives = 40/81 (49.38%), Query Frame = 1
Query:  118 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+F
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.599e-15
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCNLN---YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 646
            + ++  FFA   HET                C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          

HSP 2 Score: 36.1946 bits (82), Expect = 2.599e-15
Identity = 26/89 (29.21%), Postives = 36/89 (40.45%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFF
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 7.415e-15
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 2
Query:  335 QEKLLPFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 646
            + ++  FFA   HET                C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          

HSP 2 Score: 37.7354 bits (86), Expect = 7.415e-15
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  241 CPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            C  + FYT  +F+ AA+++  F N        REIAAFF
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of FC875474 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 3.575e-14
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 2
Query:  425 YCFISEISPPSP-YCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 646
            +C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          

HSP 2 Score: 42.3578 bits (98), Expect = 3.575e-14
Identity = 26/80 (32.50%), Postives = 36/80 (45.00%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFF 357
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA F
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
The following BLAST results are available for this feature:
BLAST of FC875474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_AVESA1.039e-1635.51Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIT_DIOJA5.418e-1631.73Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ2.599e-1536.36Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ7.415e-1534.55Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU3.575e-1438.27Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31404D01EF CTVClemen1 Citrus clementina cDNA clone C31404D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875474 ID=FC875474; Name=FC875474; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTATTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAAATGGAA
CCAT
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