FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 62/184 (33.70%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            P   DWR +G V P++DQ  CGSC++F +  ALEG   +  G     + LSE+ LV C  +       + ++GCNGGL ++ ++Y ++  G+ +E DYPYTGTD    CK    K  A +  ++ V  + +      +  G + V+I+A     Q Y  G      C      L+H V  VGYG
Sbjct:   88 PESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRD-------NGNNGCNGGLGSNVYDYIIQ-NGVAKESDYPYTGTD--STCK-TNVKAFAKITGYNKVPRNNEAELKAALSQGLVDVSIDASSAKFQLYKSGAYSDTKCKNNFFALNHEVCAVGYG 260          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 70/221 (31.67%), Postives = 108/221 (48.87%), Query Frame = 2
Query:   65 FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            F+ +T  E+R     L +  R  ++  Q   L     P   DWR++G V P++DQ  CGSC++F +  ALEG   +  G     + LSE+ +V C  +       + ++GCNGGL ++ ++Y ++  G+ +E DYPYTG+D    CK +    A       V   +E ++ A L   G + V+I+A     Q Y  G      C      L+H V  VGYG
Sbjct:   63 FAAMTNEEYRT----LLKSKRTTEENGQVKYLNIQ-APESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQCTRD-------NGNNGCNGGLGSNVYDYIIE-HGVAKESDYPYTGSD--STCKTNVKSFAKITGYTKVPRNNEAELKAAL-SQGLVDVSIDASSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYG 267          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 69/239 (28.87%), Postives = 113/239 (47.28%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN---------------------DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGK-LVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            V QFSD +  +F   +   R+ + +P    +  ++P +                     D+P   D+REKG V   KDQG CGSCW+F++ G +E        K +++LSEQ++VDC            + GC+GG    +F Y ++  G+   +DY Y   D      +  K+K+  S    SV  + E+++   L + GP++V +      ++ GG      C+  L+H V+LVGYG
Sbjct:  282 VNQFSDYSKKDFESYF---RKLVPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDC---------SKLNFGCDGGHPFYSFIYAIE-NGICMGDDYKYKAMDNLFCLNYRCKNKVTLS----SVGGVKENELIRALNEVGPVSVNVGVTDDFSFYGGGIFNGTCTEELNHSVLLVGYG 503          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 58/179 (32.40%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA-VYMQTYIGGV-SCPYICSRRLDHGVVLVGYG 703
            +P   DWR+ GAV  VK+Q  CG+CW+F+    +E    +  G L  LSEQQ++DC          +   GC GG    AFE+ +   G+     YPY        CK D    +A +  ++ V  + +      V   P+ VA++A    Q Y  GV + P  C   L+H V  +GYG
Sbjct:    2 VPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDC----------AKGYGCKGGWEFRAFEFIISNKGVASGAIYPYKAAK--GTCKTDGVPNSAYITGYARVPRNNESSMMYAVSKQPITVAVDANANFQYYKSGVFNGP--CGTSLNHAVTAIGYG 166          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 75/234 (32.05%), Postives = 107/234 (45.73%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP----------------TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            V Q+SD +  EF   +   ++ L +P D     I+P                + D P   D+R K    P KDQG+CGSCW+F+  G  E        ++ +S SEQQ+VDC  E         + GC+GG    AF Y +  G  + +E YPY G +    C   +  +   V     V  +E  +A N V  GP+ +A+ A      Y GGV     C+  L+H V+LVGYG
Sbjct:  211 VNQYSDFSKEEFDNYF---KKLLSVPMDLKSKYIVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTE---------NYGCDGGNPFYAFLYMINNGVCLGDE-YPYKGHE-DFFCLNYRCSLLGRVHFIGDVKPNELIMALNYV--GPVTIAVGASEDFVLYSGGV-FDGECNPELNHSVLLVGYG 427          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 68/221 (30.77%), Postives = 106/221 (47.96%), Query Frame = 2
Query:   65 FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAI--NAVYMQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            F+ +T  E+R     L +  R  ++  Q   L     P   DWR++G V P++DQ  CGSC++F +  ALEG   +  G     + LSE+ +  C  +       + ++GCNGGL ++ ++Y ++  G+ +E DYPYTG+D    CK +            V   +E ++ A L   G L V+I  ++   Q Y  G      C      L+H V  VGYG
Sbjct:   59 FAAMTNEEYRT----LLKSKRTTEENGQVKYLNIQ-APESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHM-QCTRD-------NGNNGCNGGLGSNVYDYIIE-HGVAKESDYPYTGSD--STCKTNVKSFRKITGYTKVPRNNEAELKAAL-SQGLLDVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYG 262          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN-----AVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            +P   D+REKG V   KDQG CGSCW+F++ G +E         ++S SEQ++VDC  +         + GC+GG    +F Y L+   L   ++Y Y   D      +  K K++ S    S+ ++ E+Q+   L + GPL+V +        Y +    G      CS  L+H V+LVGYG
Sbjct:  333 VPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD---------NFGCDGGHPFYSFLYVLQ-NELCLGDEYKYKAKDDMFCLNYRCKRKVSLS----SIGAVKENQLILALNEVGPLSVNVGVNNDFVAYSEGVYNGT-----CSEELNHSVLLVGYG 496          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 74/242 (30.58%), Postives = 106/242 (43.80%), Query Frame = 2
Query:   56 VTQFSDLTPAEFR---------RTYLGLRRKLRLPKDADQAPILPTNDLPA---------------DFDWREKGAVGPVKDQGS-CGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV-YMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            + +FSDL+  EF+         +TY  L + L   K + + PI  +    A               + +W    AV P+KDQG  CGSCW+FS+  ++E    L   K   LSEQ+LV+CD             GC GGL  +A EY + + G+  E + PYTG      C   K  I   V   S+  L  + +    +   P  V I     ++ Y GG+     C   L+H V+LVG G
Sbjct:  164 LNKFSDLSDEEFKALYPVITPPKTYTSLSKHLEFKKMSHKNPIYISKLKKAKGIEEIKDLSLITGENLNWARTDAVSPIKDQGDHCGSCWAFSSIASVESLYRLYKNKSYFLSEQELVNCD---------KSSMGCAGGLPITALEY-IHSKGVSFESEVPYTGI--VSPC---KPSIKNKVFIDSISILKGNDVVNKSLVISPTVVGIAVTKELKLYSGGIFTGK-CGGELNHAVLLVGEG 389          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 2
Query:  587 GPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            GPLAVAINA YMQTYIGGVSCPYICSRRL+HGV+LVGYGSA
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSA 41          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 69/235 (29.36%), Postives = 101/235 (42.98%), Query Frame = 2
Query:   62 QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN--DLPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF---SVVSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            ++  LT  +  +   G  RK+  PK       +      LP  +DWR       V PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC GG          +  GL+ E  +PYTGTD     K D  +  +S  ++        +E  +   LV +GPLAVA           N +Y  T   G+  P+      +H V+LVGYG+
Sbjct:  192 EYETLTLGDMIKRSGGHSRKIPRPKPTPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASVGMLEARIRILTNNSQTPILSSQEVVSCSQYA---------QGCEGGFPYLTAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAVAFEVYDDFLHYQNGIYHHT---GLRDPFNPFELTNHAVLLVGYGT 414          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CPP3_ENTHI2.685e-2033.70Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CPP2_ENTHI5.982e-2031.67Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CYSP_PLAVS1.473e-1828.87Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
BROM2_ANACO1.629e-1732.40Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP_PLAVN2.779e-1732.05Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
ACP2_ENTHI2.779e-1730.77Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CYSP_PLAFA3.629e-1732.79Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CYSP_THEAN3.072e-1630.58Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
PAPA5_CARPA1.167e-1592.68Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CATC_MACFA1.686e-1429.36Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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