FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 85/229 (37.12%), Postives = 117/229 (51.09%), Query Frame = 2
Query:   47 THGVTQFSDLTPAEFRRTYLGLRRKLR------LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAVY-MQTYIGGVSCPYICS-RRLDHGVVLVGYGS 706
            T G+ QF+D+T  EF+  YL    +        +P +A+   +      P   DWRE G V  VKDQG+CGSCW+FSTTG +EG         +S SEQQLVDC            ++GC+GGLM +A++Y LK  GL  E  YPYT  +    C+++K    A V  +  V    +    NLV    P AVA++       Y  G+     CS  R++H V+ VGYG+
Sbjct:   66 TLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVE--GQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT 278          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 81/239 (33.89%), Postives = 128/239 (53.56%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDAD---QAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            NL     + + D +A + + +FSDL+  E    Y GL     LP       +  IL  P +  P +FDWR+   V  VK+QG CG+CW+F+T G+LE    +   +L++LSEQQ +DCD           ++GC+GGL+++AFE  ++ GG+  E DYPY  T  G  C+ + ++    V +    + + E+++   L   GP+ VAI+A  +  Y  G+      +  L+H V+LVGY
Sbjct:   55 NLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLS----LPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDR---------VNAGCDGGLLHTAFESAMEMGGVQMESDYPYE-TANGQ-CRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAIDASDIVNYRRGI-MRQCANHGLNHAVLLVGY 277          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 84/217 (38.71%), Postives = 113/217 (52.07%), Query Frame = 2
Query:   71 DLTPAEFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAVY--MQTYIGGVSCPYICS-RRLDHGVVLVGYGS 706
            D+T  E  RT  GLR     P+      +   ++  PA  DWR KG V PVKDQG CGSCW+FS+ GALEG     TGKL+SLS Q LV C          S ++GC GG M +AFEY     G+  E+ YPY G D   +C +  +  AA    +  +  D ++     V + GP++V I+A     Q Y  GV     C+   ++H V+ VGYG+
Sbjct:   85 DMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYC---------VSNNNGCGGGYMTNAFEYVRLNRGIDSEDAYPYIGQD--ESCMYSPTGKAAKCRGYREIPEDNEKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDTGCNPENINHAVLAVGYGA 290          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 72/182 (39.56%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSR-RLDHGVVLVGYGS 706
            +P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E         + GC GG M +AF+Y  + GG+  E+ YPY G D   +C ++ +  AA    +  + + +E  +   + + GP++V+I+A     Q Y  GV     C R  ++H V++VGYG+
Sbjct:  115 VPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVSE---------NYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQD--ESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGT 285          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 72/182 (39.56%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSR-RLDHGVVLVGYGS 706
            +P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E         + GC GG M +AF+Y  + GG+  E+ YPY G D   +C ++ +  AA    +  + + +E  +   + + GP++V+I+A     Q Y  GV     C R  ++H V++VGYG+
Sbjct:  115 VPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTE---------NYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQD--ESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGT 285          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 77/227 (33.92%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   41 SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV-YMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            S T G+ QF+D+T  EF   Y GL     LP +  + P++  +D+     P   DWR+ GAV  VK+QG CGSCW+F++   +E    +  G LVSLSEQQ++DC          +   GC GG +N A+ + +   G+     YPY        CK +    +A +  ++ V  + ++     V N P+A A++A    Q Y  GV     C  RL+H +V++GYG
Sbjct:   78 SYTLGINQFTDMTNNEFVAQYTGLS----LPLNIKREPVVSFDDVDISSVPQSIDWRDSGAVTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDC----------AVSYGCKGGWINKAYSFIISNKGVASAAIYPYKAAK--GTCKTNGVPNSAYITRYTYVQRNNERNMMYAVSNQPIAAALDASGNFQHYKRGVFTG-PCGTRLNHAIVIIGYG 287          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 82/227 (36.12%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSR---RLDHGVVLVGYGS 706
            G+  ++DL+  EF      ++ K+  P       +     L   P+  DWR +  V PVKDQG CGSCW+F +TG+LEG N +  G+LVSLSEQQLVDC         GS   GC GG  +SAF+Y ++ G L  E +YPY     G       +    S+  + +V S  E  +   +   GP+A+AI+A     + Y+ GV     C      LDH V+ +GYG+
Sbjct:  269 GMNHYADLSNKEFNTL---VKPKVARPSVTGADSVHDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQLVDC-----AILTGS--QGCGGGFASSAFQYVMEIGSLATESNYPYL-MQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAIGYGT 484          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 78/218 (35.78%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKF-DKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYIC-SRRLDHGVVLVGYG 703
            + +FSD+T  EFR   L      R   +  +   L     P   DWR KG V PV++QG CGSCW+ ST  A+E  + + +G  V LS QQLVDC            + GCNGG   + FEY +K  GL  + DYPY+G +    CK  DKS+    +  +  V+  E  +   +   GP++  +    M++Y GG+     C    L HGV +VGYG
Sbjct:   72 INKFSDITDEEFR-DMLMKNEASRPNLEGLEVADLTVGAAPESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDCSTSYG-------NHGCNGGFAVNGFEY-VKDNGLESDADYPYSGKE--DKCKANDKSRSVVELTGYKKVTASETSLKEAVGTIGPISAVVFGKPMKSYGGGIFDDSSCLGDNLHHGVNVVGYG 278          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 80/241 (33.20%), Postives = 122/241 (50.62%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLR-RKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            NLR    R   + S   G+ +F+DL+  E+     G   R  R       +    T+D   LP   DWR +GAV  VKDQG C SCW+FST GA+EG N + TG+LV+LSEQ L++C+ E         ++GC GG + +A+E+ +  GGL  + DYPY   +     +  +      +  +  +  +++      V + P+   +++     Q Y  GV     C   L+HGVV+VGYG+
Sbjct:   83 NLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGGKVETAYEFIMNNGGLGTDNDYPYKALNGVCEGRLKEDNKNVMIDGYENLPANDEAALMKAVAHQPVTAVVDSSSREFQLYESGV-FDGTCGTNLNHGVVVVGYGT 313          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 77/223 (34.53%), Postives = 115/223 (51.57%), Query Frame = 2
Query:   47 THGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVVLVGYGS 706
            T  + +F D T  EFR++   +     +     Q  +  +  LP   DWRE+G V PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC            + GC  G  + AFEY LK  GL  E  YPY G D    C++     +A++ ++  +  +E  +   +   GP++ AI+A +   + Y GG+     CS   ++H V++VGYGS
Sbjct:   74 TMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHV--SIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVG-------NKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKD--GPCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGS 285          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATLL_FASHE5.398e-2937.12Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATV_NPVOP9.207e-2933.89Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATK_CHICK9.207e-2938.71Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATK_RAT2.679e-2839.56Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATK_MOUSE2.679e-2839.56Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
ANAN_ANACO2.679e-2833.92Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
CFAD_DICDI3.499e-2836.12Counting factor associated protein D OS=Dictyostel... [more]
CATLL_PHACE3.499e-2835.78Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CPR4_ARATH5.968e-2833.20Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CATJ_MOUSE7.794e-2834.53Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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