FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 84/239 (35.15%), Postives = 116/239 (48.54%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            NL       K + S   G+ +F+DL+  EF   Y+G      + +  D+  I   T +LP + DWR+KGAV PV+ QGSCGSCW+FS    +EG N + TGKLV LSEQ+LVDC+             GC GG    A EY  K G  +R + YPY         K     I  +     V   +E  +  N +   P++V + +     Q Y GG+     C  ++DH V  VGYG +
Sbjct:   75 NLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPPYALEYVAKNGIHLRSK-YPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNL-LNAIAKQPVSVVVESKGRPFQLYKGGI-FEGPCGTKVDHAVTAVGYGKS 301          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 75/223 (33.63%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   41 SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG-GLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL--DEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            +A +GV QFS L P EF+  YLG +        A+    +P   LP  FDWR+K  V PV++Q  CG CW+FS   A+E A  +    L  LS QQ++DC            +SGC GG    A  +  +    L+ +  YP+   + G    F +S+   SV +FS  +    ED++A  L+  GPL V ++A+  Q Y+GG+   +  S   +H V++ G+
Sbjct:   55 TAFYGVNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRPIPNVSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFN---------NSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVN-GQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMSWQDYLGGIIQHHCSSGEANHAVLITGF 267          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 75/180 (41.67%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVVLVGYG 703
            P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G D   +C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H V+ VGYG
Sbjct:  117 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQD--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYG 285          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 66/159 (41.51%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV 643
            LP   DWREKGAV PVK+QG CGSCW+F    A+EG N + TG L+SLSEQQLVDC          + + GC GG    AF+Y +  GG+  EE YPYTGT+    C   ++    S+ ++  V  ++++     V N P++V ++A     Q Y  G+
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDC---------STRNHGCEGGWPYRAFQYIINNGGINSEEHYPYTGTN--GTCDTKENAHVVSIDSYRNVPSNDEKSLQKAVANQPVSVTMDAAGRDFQLYRNGI 150          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 79/228 (34.65%), Postives = 112/228 (49.12%), Query Frame = 2
Query:   47 THGVTQFSDLTPAEFRRTYLGL------RRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGV-SCPYICSRRLDHGVVLVGYG 703
            T  + +F D T  EFR+  + +        K  + ++A          LP   DWR+KG V PV+ QG C +CW+F+ TGA+E      TGKL  LS Q LVDC            ++GC GG   +AF+Y L  GGL  E  YPY G D    C+++     A +  F  +   ED + A +   GP+   I+A +   + Y GG+   P   S  + HGV++VGYG
Sbjct:   74 TMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSI-------LPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKP-------QGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKD--GPCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYG 285          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 75/180 (41.67%), Postives = 100/180 (55.56%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVVLVGYG 703
            P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G D    C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H V+ VGYG
Sbjct:  117 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDEN--CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYG 285          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 82/221 (37.10%), Postives = 114/221 (51.58%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVVLVGYG 703
            +    D+T  E  +   GL+  L   +  D   I       P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G +   +C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H V+ VGYG
Sbjct:   75 MNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 284          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 82/245 (33.47%), Postives = 118/245 (48.16%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI------LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDK-SKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            NL+    R K+      G+ +FSDL+  EF+  Y+G      LP+D    P           DLP   DWR KGAV PVK QG C SCW+FST   +EG N + TG LV LSEQ+LVDCD +           GCN G  +++ +Y  + G  +R + YPY    +   C+ ++             V  + +    N + + P++V + +     Q Y GG+     C  ++DH V  VGYG +
Sbjct:   75 NLKYIDERNKMINGYWLGLNEFSDLSNDEFKEKYVG-----SLPEDYTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDKQ---------SYGCNRGYQSTSLQYVAQNGIHLRAK-YPYIA--KQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGI-FEGSCGTKVDHAVTAVGYGKS 301          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 75/180 (41.67%), Postives = 100/180 (55.56%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVVLVGYG 703
            P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G D    C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H V+ VGYG
Sbjct:  116 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDEN--CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYG 284          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 84/242 (34.71%), Postives = 118/242 (48.76%), Query Frame = 2
Query:    2 NLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRL-DHGVVLVGYGSA 709
            NL +A + ++ D  +A  GVT FSDLT  EF R Y   R     PK   +       + +P   DWR+  G +  VK Q SC  CW+ +  G +E    +   + V LS Q+L+DC         G C  GC GG +  AF   L   GL  E+DYP+ G  + H C   K    A + +F ++  +E +IA  L   GP+ V IN   ++ Y  GV  + P  C   L DH V+LVG+G +
Sbjct:   69 NLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAFITVLNNSGLASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTINMKLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKS 301          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
PAPA3_CARPA1.018e-2735.15Caricain OS=Carica papaya PE=1 SV=2[more]
CATO_MOUSE1.018e-2733.63Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATK_CANFA1.018e-2741.67Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CPGP1_ZINOF1.329e-2741.51Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATR_MOUSE1.329e-2734.65Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATK_PIG1.329e-2741.67Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATK_HUMAN1.329e-2737.10Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
PAPA4_CARPA1.736e-2733.47Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATK_BOVIN1.736e-2741.67Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CATW_FELCA2.268e-2734.71Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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