FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 66/181 (36.46%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVVLVGYGSA 709
            P   DWR+KGAV PVK+Q  CGSCW+FST   +EG N + TGKL+SLSEQ+L+DCD             GC GG    + +Y    GG+  E++YPY    +G     +K      +  +  V  +++      + N P++V   +     Q Y GG+ + P  C  + DH V  +GYG A
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR---------SHGCKGGYQTGSIQYVADNGGVHTEKEYPYE-KKQGKCRAKEKKGTKVQITGYKRVPANDEISLIQGIGNQPVSVLHESKGRAFQLYKGGIFNGP--CGYKNDHAVTAIGYGKA 170          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   41 SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG-GLMREEDYPYTGTDRGHACKFDKSKIAASVANFSV--VSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            +A +G+ QFS L P EF+  YL  +        A+    +P   LP  FDWR+K  V  V++Q  CG CW+FS  GA+E A  +    L  LS QQ++DC +          + GCNGG   +A  +  K    L+++ +YP+     G    F  S    S+  +S    S  ED++A  L+  GPL V ++AV  Q Y+GG+   +  S   +H V++ G+
Sbjct:   64 TAFYGINQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYN---------NYGCNGGSTLNALNWLNKMQVKLVKDSEYPFK-AQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGF 276          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 80/242 (33.06%), Postives = 115/242 (47.52%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPK---DADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACK-FDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            NL       K + S   G+  F+DL+  EF++ Y+G   +        D +        + P   DWR KGAV PVK+QG+CGSCW+FST   +EG N + TG L+ LSEQ+LVDCD             GC GG   ++ +Y     G+   + YPY    + + C+  DK      +  +  V  + +      + N PL+V + A     Q Y  GV     C  +LDH V  VGYG++
Sbjct:   75 NLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH---------SYGCKGGYQTTSLQYVAN-NGVHTSKVYPYQA--KQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGV-FDGPCGTKLDHAVTAVGYGTS 303          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 79/238 (33.19%), Postives = 109/238 (45.80%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND--LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            NL+      K + S   G+  F+D++  EF+  Y G         +     +L   D  +P   DWR+KGAV PVK+QGSCGSCW+FS    +EG   + TG L   SEQ+L+DCD             GCNGG   SA +   +  G+     YPY G  R +    +K   AA       V    +      + N P++V + A     Q Y GG+     C  ++DH V  VGYG
Sbjct:   75 NLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR---------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYG 300          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 75/225 (33.33%), Postives = 112/225 (49.78%), Query Frame = 2
Query:   50 HGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQ--TYIGGVSCPYICSR-RLDHGVVLVGYG 703
            HG T     F D+T  EFR+  + +   +   K         + +LP   +W+++G V PV+ QG C SCW+FS TGA+EG  F  TG+L+ LS Q LVDC            + GC  G    A  Y ++ GGL  E  YPY   ++  +C++      A++  F  V  +ED +   +   GP++VAI+A +     Y  G+     CS   + H ++LVGYG
Sbjct:   71 HGFTMEMNAFGDMTLEEFRKVMIEI--PVPTVKKGKSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRP-------QGNWGCYLGNTYLALHYVMENGGLESEATYPY--EEKDGSCRYSPENSTANITGFEFVPKNEDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCVVTHSMLLVGYG 284          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 80/229 (34.93%), Postives = 114/229 (49.78%), Query Frame = 2
Query:   32 LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV--SCPYICSRRLDHGVVLVGYGS 706
            ++ +A   +  F+D+T  EF +T+LG+  ++       +A +      P   DWR    + P KDQG CGSCW+F TT  LEG      GKL S SEQQLVDCD         + D+GC GG  +++ ++  +  GL  E DYPY        CK  K+ +A    +  V    E  +   + +NGP+AV ++A     Q Y  G   S     SR ++H V  VGYGS
Sbjct:   49 VEANANTELNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVKAA---PESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDLGKLYSFSEQQLVDCD---------ASDNGCEGGHPSNSLKFIQENNGLGLESDYPYKAV--AGTCKKVKN-VATVTGSRRVTDGSETGLQTIIAENGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGS 260          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 64/178 (35.96%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            P   DWREKGAV PVK+Q  CGSCW+FST   +EG N + TG+L+SLSEQ+L+DC++            GC+GG    + +Y +   G+  E +YPY    +G     DK      +  +  V  +++      + N P++V  ++     Q Y GG+     C    DH V  VGYG
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR---------SHGCDGGYQTPSLQYVVD-NGVHTEREYPYE-KKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGI-YEGPCGTNTDHAVTAVGYG 167          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 83/255 (32.55%), Postives = 118/255 (46.27%), Query Frame = 2
Query:   20 RRQKLDPSATHGVTQFSDLTPAEF-------------------------RRTYL-GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN-AVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            + QK D     G+ +FSDLT  EF                          +TYL  L++ L   +D D A +   N      DWR   +V  VKDQ +CG CW+FST G++EG       K   LS Q+L+DCD         S  +GC GGL+ SA+EY  K  GL+  +D P+   D+   C   K+K   SV ++ V    E  +    + + P +V ++ +  +  Y  GV     C + L+H VVLVG G
Sbjct:  157 KEQKGDEPYVKGINRFSDLTEREFYKLFPVMKPPKATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGEN-----LDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDCD---------SFSNGCQGGLLESAYEYVRKY-GLVSAKDLPF--VDKARRCSVPKAK-KVSVPSYHVFKGKE--VMTRSLTSSPCSVYLSVSPELAKYKSGVFTGE-CGKSLNHAVVLVGEG 390          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVVLVGYG 703
            +P   DWR+ GAV  VK+QG CG CW+F+    +EG   +  G LV LSEQ+++DC          +   GC GG +N A+++ +   G+  +E+YPY        C  +    +A +  +S V  +++      V N P+A  I+A     Q Y GGV S P  C   L+H + ++GYG
Sbjct:    2 VPQSIDWRDYGAVNEVKNQGPCGGCWAFAAIATVEGIYKIRKGNLVYLSEQEVLDC----------AVSYGCKGGWVNRAYDFIISNNGVTTDENYPYRAYQ--GTCNANYFPNSAYITGYSYVRRNDESHMMYAVSNQPIAALIDASGDNFQYYKGGVYSGP--CGFSLNHAITIIGYG 167          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 64/184 (34.78%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            P   DWR+KG V P++DQG+CGSC++F +  ALEG   +  G   + + LSE+ +V C  E         ++GCNGGL ++ + Y ++  G+ +E DYPYTG+D    C+ D  K  A + +++ V+ + +      +  G + V+I+A  V  Q Y  G      C      L+H V  VGYG
Sbjct:   95 PKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTRE-------DGNNGCNGGLGSNVYNYIME-NGIAKESDYPYTGSD--STCRSD-VKAFAKIKSYNRVARNNEVELKAAISQGLVDVSIDASSVQFQLYKSGAYTDTQCKNNYFALNHEVCAVGYG 267          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MEX2_JACME2.507e-2636.46Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATO_HUMAN3.275e-2633.18Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
PAPA2_CARPA4.277e-2633.06Chymopapain OS=Carica papaya PE=1 SV=2[more]
PAPA1_CARPA2.772e-2533.19Papain OS=Carica papaya PE=1 SV=1[more]
CATM_MOUSE2.772e-2533.33Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
ACP1_ENTHI3.621e-2534.93Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
MEX1_JACME6.176e-2535.96Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CYSP_THEPA1.521e-2332.55Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
MDO1_PSEMR7.549e-2333.89Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
CPP1_ENTHI3.747e-2234.78Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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