FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: GMSA_DICDI (Gamete and mating-type specific protein A OS=Dictyostelium discoideum GN=gmsA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 59/198 (29.80%), Postives = 83/198 (41.92%), Query Frame = 2
Query:  131 PKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG----KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA-VYMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            PK    AP  P        DW       P++DQG CGSCW+F+++ ALE    +  G      + LS Q  V+C             SGCNGG   + F +  K  G+  E+D PY     G +C    S       N+      +  + A L K GP+ +A+      Q Y  G+         ++H V+LVGY  A
Sbjct:  226 PKPTTPAPTTPAPTSTLTVDWTSYQT--PIRDQGQCGSCWAFASSAALESRYLIKYGTAQKSTLQLSNQNAVNC-----------IASGCNGGWSGNYFNF-FKTPGIAYEKDDPYKAV-TGTSCITTSSVARFKYTNYGYTEKTKAALLAEL-KKGPVTIAVYVDSAFQNYKSGIYNSATKYTGINHLVLLVGYDQA 407          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 71/240 (29.58%), Postives = 103/240 (42.92%), Query Frame = 2
Query:   62 QFSDLTPAEFRRTYLGLRRKLRLPKDAD-----QAPILPTNDLPADFDWREKGAVG---PVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV-----SLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            ++  LT  E  R   G  R++  PK A      Q  IL    LP  +DWR    +    PV++QGSCGSC+SF++ G +E    + T    +  LS Q++V C              GC GG          +  GL+ E+ +PYTGTD    C+  +       + +  V       +E  +   LV  GP+AVA             VY  T   G+  P+      +H V+LVGYG+
Sbjct:  192 EYETLTLKEMIRRGGGHSRRIPRPKPAPITAEIQKKIL---HLPTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTD--SPCRLKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHHT---GLRDPFNPFELTNHAVLLVGYGT 414          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 69/235 (29.36%), Postives = 101/235 (42.98%), Query Frame = 2
Query:   62 QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN--DLPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF---SVVSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            ++  LT  +  R   G  RK+  PK A     +      LP  +DWR       V PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC GG          +  GL+ E  +PYTGTD     K D  +  +S  ++        +E  +   LV +GP+AVA             +Y  T   G+  P+      +H V+LVGYG+
Sbjct:  192 EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGT 414          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 69/235 (29.36%), Postives = 101/235 (42.98%), Query Frame = 2
Query:   62 QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN--DLPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF---SVVSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            ++  LT  +  R   G  RK+  PK A     +      LP  +DWR       V PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC GG          +  GL+ E  +PYTGTD     K D  +  +S  ++        +E  +   LV +GP+AVA             +Y  T   G+  P+      +H V+LVGYG+
Sbjct:  192 EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKVLHLPTSWDWRNIHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTSNSQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGT 414          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 66/243 (27.16%), Postives = 111/243 (45.68%), Query Frame = 2
Query:   17 ARRQKLDPSATHGVTQFSDLTPAEFRRTYL-------GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANL-VKNGPLAVAINAVYMQTYIGGVSCPYICS----RRLDHGVVLVGYGS 706
            A  + ++ +    + QFSD++  EF+  YL        L+++  L   A    I   N +P + D R  G V  +K+Q +CGSCW+FS    +E +N+L+   + + LSEQ+LVDC          +   GC G  + +   Y ++  G++ E+ YPY    R   C+   +K         +   + D+I   L  K   L+V I    + ++        + S    +R  H + +VGYGS
Sbjct:   52 ASLEHIEKAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVN-IPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVE-SNYLSYDNVSLDLSEQELVDC----------ASQHGCGGDTVLNGLRY-IQKNGVVEEQSYPYKA--REGRCQRPNAKRYGIKDLCQIYPPNGDKIRTYLATKQAALSVIIGIRDLDSFRHYDGRTILQSDNGGKRNFHAINIVGYGS 279          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 64/229 (27.95%), Postives = 94/229 (41.05%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYL-------GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV----YMQTYIGGVSCPYICSRRLD-HGVVLVGYGS 706
            +   SDL+  EF+  YL        L+ +  L  +     I   N +P++ D R    V P++ QG CGSCW+FS   A E A        + LSEQ+LVDC          +   GC+G  +    EY ++  G++ E  YPY    R   C+   S+         +   D  QI   L +       I  +      Q Y G     +    + + H V +VGYGS
Sbjct:   64 INHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVN-VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC----------ASQHGCHGDTIPRGIEY-IQQNGVVEERSYPYVA--REQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGS 278          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 60/197 (30.46%), Postives = 90/197 (45.69%), Query Frame = 2
Query:  173 LPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV-----SLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            LP  +DWR       V PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC+GG          +  G++ E  +PYT TD    CK  ++ +    + +  V       +E  +   LVK+GP+AVA           + +Y  T   G+S P+      +H V+LVGYG
Sbjct:  230 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYA---------QGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA--PCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHT---GLSDPFNPFELTNHAVLLVGYG 412          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 66/237 (27.85%), Postives = 104/237 (43.88%), Query Frame = 2
Query:   26 QKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLP-------ADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVVLVGYGSA 709
            Q+ D +   G  QF  L+  EF   YL         + +D +  +    LP          DWR    V   K+QG C S W+FS + +LE    +   + ++ S QQ+VDCD+          ++GC+GG    A EY L+  GL+   +YPY    +   CK  ++     +  +S V   +  +   L  N P++V + A   Q Y  G+  +C    S   +H  + VG+ SA
Sbjct:   64 QREDVTYQMGENQFMTLSHEEFVDLYL---------QKSDSSVNIMGASLPEVQLEGLGAVDWRNYTTV---KEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRV-GLVSSTNYPYVA--KNQTCKQSRNG-TYFINGYSFVGGSQSNLQYYL-NNYPISVGVEASNWQFYRSGLFSNC---SSNGTNHYALAVGFDSA 271          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 59/198 (29.80%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  170 DLPADFDWREKGAVG---PVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV-----SLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            +LP  +DWR    V    PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC+GG          +  G++ E  +PYT  D    CK  ++ +    +++  V       +E  +   LVK+GP+AVA           + +Y  T   G+S P+      +H V+LVGYG
Sbjct:  229 NLPESWDWRNVQGVNYVSPVRNQESCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSPYA---------QGCDGGFPYLIAGKYAQDFGVVEESCFPYTAKD--SPCKPRENCLRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHT---GLSDPFNPFELTNHAVLLVGYG 412          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 69/241 (28.63%), Postives = 104/241 (43.15%), Query Frame = 2
Query:   26 QKLDPSATHGVTQ-FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREK--GAVGPVKDQGSCGSCWSFSTTGALEGANFLA--TGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY---TGTDRGHA---CKFDKSKI-AASVANFSVVSLDEDQIAANLVKNGPLAVA--INAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            + L+P    G+ + F  LT  E     + +         A +      +D+P  FD+RE+    +  V DQG CGSCW+FS+         +A    K V  S Q +V CDH          D  CNGG + + +++  K  G   +E  PY   + T RG     C    SK+  A+  ++    LD   +   L  +GPL VA  +++ +M  Y  GV           H V +VGYG+
Sbjct:   25 KSLNPRWKAGIPKRFEGLTKDEISSLLMPVSFLKNAKGAAPRGTFTDKDDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATFGDRRCVAGLDKKPVKYSPQYVVSCDHG---------DMACNGGWLPNVWKFLTKT-GTTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMY-YESGVYQHTYGYMEGGHAVEMVGYGT 254          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
GMSA_DICDI2.202e-1429.80Gamete and mating-type specific protein A OS=Dicty... [more]
CATC_BOVIN2.202e-1429.58Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_HUMAN3.755e-1429.36Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
CATC_PONAB4.905e-1429.36Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
PEPT1_PSOOV3.179e-1327.16Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
PEPT1_DERFA3.179e-1327.95Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATC_RAT1.578e-1230.46Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATL3_PARTE3.515e-1227.85Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
CATC_MOUSE5.996e-1229.80Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATB2_GIALA5.996e-1228.63Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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