FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 120/235 (51.06%), Postives = 163/235 (69.36%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  +D  ERL+G  AK Q   NP  T F  KRL+GRR+ D  V+ D KL P+K++        +    + + + ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF++++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSIVAISDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKTKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_LAWIP (Chaperone protein dnaK OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dnaK PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 119/232 (51.29%), Postives = 165/232 (71.12%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS V FTD +RL+GDAAK Q   N   T+F  KRL+GRR     V    +  P+K++A       + +    + ++++ +EIS+++L K++  AEAYLG ++  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA++AYG DKKA     + + +FDLGGGTFDVS+L + + + EV AT GDT LGGEDFD R++N+ V+EFK+++  D+S +  AL+RL+
Sbjct:   34 RTTPSVVAFTDKDRLVGDAAKRQAITNSARTIFAVKRLMGRRADSPEVVHWKEHAPYKIVAASNGDAAVEI----DGREYSPQEISAIILSKLKADAEAYLGESVSEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAASLAYGFDKKA----NEKIAVFDLGGGTFDVSILEVGDSVVEVLATNGDTFLGGEDFDQRIINYLVEEFKKEQGIDLSKDNMALQRLK 257          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_HAMD5 (Chaperone protein dnaK OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.084e-61
Identity = 126/239 (52.72%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD  E L+G  AK Q   N  NT F  KRL+GR+FSD   Q D  + PF ++   +D     ++ KG++   A  +IS+ VL KM++ AE YLG T+  AVVTVPAYFND+QRQATKDAG I+GL + RIINEPTAAAIAYGLDK     G   + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTDDGETLVGQPAKRQAVTNAKNTFFAIKRLVGRKFSDQETQRDKDIMPFDILE--SDNGDAWLSVKGQKT--APPQISAEVLKKMKKTAEDYLGETVTEAVVTVPAYFNDAQRQATKDAGRISGLEIKRIINEPTAAAIAYGLDK---GKGNSTIAVYDLGGGTFDISIIEIDDVDGEKTFEVLATNGDTHLGGEDFDNRLINYLVDEFKKEQGFDLRKDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ANAMM (Chaperone protein dnaK OS=Anaplasma marginale (strain St. Maries) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.084e-61
Identity = 122/234 (52.14%), Postives = 169/234 (72.22%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT+ ERL+G+ AK Q  +N  NT++ +KR+IGRR+ D     D+K  P++V   PA      +  +GE   ++  +I + VL K++E AE Y G+ +K AV+TVPAYFND+QRQATKDAG IAGL+V+RIINEPTAAA+AYGLDK      ++ ++++DLGGGTFDVS+L I EG+FEVKAT GDT LGGEDFDN ++ H ++ FK++   D+  +P A++R++ A
Sbjct:   40 RTTPSVVAFTENERLVGELAKRQANINAQNTIYASKRIIGRRYDDMR---DVKC-PYEVF--PAKNGDAWIRARGEG--YSPVQIGAFVLEKIKETAERYFGAPVKKAVITVPAYFNDAQRQATKDAGTIAGLDVVRIINEPTAAALAYGLDK---GDKQRTIVVYDLGGGTFDVSVLEIAEGVFEVKATNGDTKLGGEDFDNAVMEHMMESFKQETGIDLHNDPMAVQRIKEA 262          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AERHH (Chaperone protein dnaK OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.084e-61
Identity = 129/239 (53.97%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+++ P+ +    AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA AYG++K     GE+ V ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++N+ V+EFKR++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIIAYADDGEILVGQPAKRQAITNPKNTLFAIKRLIGRRFEDDEVQRDLEIMPYAI--AKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAFAYGVNKVK---GERKVAVYDLGGGTFDISIIEIDEVEGETTFEVLATNGNTHLGGEDFDNRVINYLVEEFKREQGIDLRKDQLALQRLKDA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFA (Chaperone protein dnaK OS=Xylella fastidiosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 128/239 (53.56%), Postives = 164/239 (68.62%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +T D E L+G AAK Q   NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EF + +  D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYTKDGEVLVGAAAKRQAVTNPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADAKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDKRVIDYLVDEFNKDQGIDLRKDPLALQRLKDA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_XANOR (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 128/239 (53.56%), Postives = 166/239 (69.46%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFDNR++ + V EF + +  D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDNRVIEYLVDEFNKDQGIDLRKDPLALQRLKDA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_XANOP (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 128/239 (53.56%), Postives = 166/239 (69.46%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFDNR++ + V EF + +  D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDNRVIEYLVDEFNKDQGIDLRKDPLALQRLKDA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_XANOM (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 128/239 (53.56%), Postives = 166/239 (69.46%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFDNR++ + V EF + +  D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDNRVIEYLVDEFNKDQGIDLRKDPLALQRLKDA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SULMW (Chaperone protein dnaK OS=Sulcia muelleri (strain GWSS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 119/233 (51.07%), Postives = 167/233 (71.67%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS + F +  E  +GD AK Q   NP+ T+F  KR +GR FS+  V  ++K  P+K+I G  D P + +      K +  +EIS+M+L KM++ AE YLG+ +K AV+TVPAYFND+QRQATK+AG IAGLNV RIINEPTAAA+AYGLDK   +   K ++++DLGGGTFD+S+L + +G+FEV +T+GDTHLGG+DFD  +++  V+EFK ++  D+S +  A +RL+
Sbjct:   34 RTTPSIIAFIEGGETKVGDPAKRQAVTNPSKTIFSIKRFMGRNFSE--VTEELKNIPYKIIKGENDTPRVSIG----NKLYTPQEISAMILQKMKKTAEDYLGNEVKQAVITVPAYFNDAQRQATKEAGEIAGLNVERIINEPTAAALAYGLDKNNQN---KKIVVYDLGGGTFDISILELGDGVFEVLSTSGDTHLGGDDFDKVIIDWLVKEFKVEQGVDLSNDSMAYQRLK 257          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPS2.361e-6151.06Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_LAWIP2.361e-6151.29Chaperone protein dnaK OS=Lawsonia intracellularis... [more]
DNAK_HAMD53.084e-6152.72Chaperone protein dnaK OS=Hamiltonella defensa sub... [more]
DNAK_ANAMM3.084e-6152.14Chaperone protein dnaK OS=Anaplasma marginale (str... [more]
DNAK_AERHH3.084e-6153.97Chaperone protein dnaK OS=Aeromonas hydrophila sub... [more]
DNAK_XYLFA4.028e-6153.56Chaperone protein dnaK OS=Xylella fastidiosa GN=dn... [more]
DNAK_XANOR4.028e-6153.56Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_XANOP4.028e-6153.56Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_XANOM4.028e-6153.56Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_SULMW4.028e-6151.07Chaperone protein dnaK OS=Sulcia muelleri (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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